Variant report

Variant	rs62335347
Chromosome Location	chr4:158946325-158946326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62335303	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv881288	chr4:158891733-159028080	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158937200-158947000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:158937200-158947200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:158939800-158955200	Weak transcription	Ovary	ovary
4	chr4:158940000-158950200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:158943600-158946400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:158945200-158946600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr4:158945200-158947200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:158945400-158946400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:158946200-158946600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:158946200-158946600	Enhancers	HMEC	breast
11	chr4:158946200-158946800	Enhancers	A549	lung
12	chr4:158946200-158946800	Enhancers	NHEK	skin
13	chr4:158946200-158947200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:158946200-158947400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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