Variant report

Variant	rs62337742
Chromosome Location	chr5:11853905-11853906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28730392	1.00[ASN][1000 genomes]
rs4642366	1.00[ASN][1000 genomes]
rs56028618	1.00[ASN][1000 genomes]
rs56085104	1.00[ASN][1000 genomes]
rs62337970	1.00[ASN][1000 genomes]
rs62337987	1.00[ASN][1000 genomes]
rs72738543	1.00[ASN][1000 genomes]
rs72738547	1.00[ASN][1000 genomes]
rs72738573	1.00[ASN][1000 genomes]
rs7718343	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461977	chr5:11571940-12022698	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv597153	chr5:11571940-12022698	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1023447	chr5:11649045-11861659	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1022060	chr5:11697670-11880178	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv537658	chr5:11697670-11880178	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1023280	chr5:11697670-11885740	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv869087	chr5:11715642-11876226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2753896	chr5:11848600-11967600	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:11848800-11855000	Weak transcription	Brain Angular Gyrus	brain
2	chr5:11849800-11855200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:11851200-11856600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:11851400-11854600	Enhancers	Brain Germinal Matrix	brain
5	chr5:11852400-11854000	Weak transcription	Brain Anterior Caudate	brain
6	chr5:11852400-11866600	Weak transcription	Fetal Brain Male	brain
7	chr5:11852800-11854000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr5:11853000-11854600	Enhancers	Fetal Brain Female	brain
9	chr5:11853200-11854000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:11853400-11854400	Enhancers	Pancreas	Pancrea
11	chr5:11853800-11855800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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