Variant report

Variant	rs62339913
Chromosome Location	chr4:151025207-151025208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10000923	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10002404	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10014161	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10016602	0.90[ASN][1000 genomes]
rs10024397	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10024701	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10031447	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10440445	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11721351	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11728756	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12502816	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12503886	1.00[ASN][1000 genomes]
rs12503967	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28470198	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28489242	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28504590	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28555093	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28644462	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs28733182	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28781622	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28840424	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34368156	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34450486	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35939331	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4358376	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4405992	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4414936	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4422402	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4481220	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4530613	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4616733	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4635802	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs60356991	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs62338171	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62339911	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6818273	0.91[ASN][1000 genomes]
rs7436161	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7665011	0.96[ASN][1000 genomes]
rs7668293	0.90[ASN][1000 genomes]
rs7689735	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7692823	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9307864	0.97[ASN][1000 genomes]
rs9307865	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9307866	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9307867	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9968350	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9968416	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9968430	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9968497	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9986068	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9996035	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv830111	chr4:150867357-151035556	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151002000-151026200	Weak transcription	Left Ventricle	heart
2	chr4:151011200-151028200	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:151012200-151035400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:151015800-151027200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:151016400-151028000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:151017800-151030000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:151018000-151031800	Weak transcription	Brain Anterior Caudate	brain
8	chr4:151019200-151025600	Weak transcription	A549	lung
9	chr4:151019400-151027800	Weak transcription	Fetal Heart	heart
10	chr4:151019400-151030000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:151019400-151037000	Weak transcription	NHLF	lung
12	chr4:151019600-151027800	Weak transcription	Osteobl	bone
13	chr4:151019600-151037200	Weak transcription	HSMMtube	muscle
14	chr4:151020000-151034400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:151020200-151031200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr4:151021000-151035400	Weak transcription	HSMM	muscle
17	chr4:151021000-151037000	Weak transcription	Pancreas	Pancrea
18	chr4:151021400-151026800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:151021600-151030000	Weak transcription	Fetal Stomach	stomach
20	chr4:151022400-151028800	Weak transcription	Brain Germinal Matrix	brain
21	chr4:151023200-151027000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:151023600-151025800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:151023600-151029200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:151024200-151028200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:151024800-151031400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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