Variant report

Variant	rs62341683
Chromosome Location	chr4:150975181-150975182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12507820	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12509998	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4401436	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4519777	0.84[AMR][1000 genomes]
rs56039024	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62338169	0.84[AMR][1000 genomes]
rs62338170	0.84[AMR][1000 genomes]
rs62338172	0.84[AMR][1000 genomes]
rs62339872	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62339873	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62339881	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62339882	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62339883	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62339884	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62339885	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62339886	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62339887	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62339888	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62339890	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62339893	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62339908	0.84[AMR][1000 genomes]
rs62339914	0.84[AMR][1000 genomes]
rs62341682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62341685	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62341687	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62341688	0.84[EUR][1000 genomes]
rs72730305	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72730312	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72730320	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72730321	0.81[AMR][1000 genomes]
rs72730325	0.84[AMR][1000 genomes]
rs7655129	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7658824	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7675626	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv830111	chr4:150867357-151035556	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150972200-150977200	Weak transcription	A549	lung
2	chr4:150975000-150976200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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