Variant report

Variant	rs62344311
Chromosome Location	chr4:171793216-171793217
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10520197	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11725464	0.90[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11730057	0.90[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11734056	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11737648	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1367997	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1368000	0.80[EUR][1000 genomes]
rs1432082	0.94[ASN][1000 genomes]
rs1469611	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1469612	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1469613	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469614	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1560563	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1560564	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1560565	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1560566	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17056275	0.80[EUR][1000 genomes]
rs1864779	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2217564	0.80[EUR][1000 genomes]
rs34590697	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35396046	0.94[ASN][1000 genomes]
rs4422388	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs57505296	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61562612	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62344266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62344268	0.85[EUR][1000 genomes]
rs62344305	0.84[AFR][1000 genomes]
rs62344306	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62344307	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62344308	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62344310	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62344312	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62344315	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72700828	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7661513	0.94[ASN][1000 genomes]
rs7669141	0.94[ASN][1000 genomes]
rs7673440	0.94[ASN][1000 genomes]
rs919668	0.86[AFR][1000 genomes]
rs930183	0.90[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs989111	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs989113	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs991614	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs991615	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv881415	chr4:171694739-171842726	Active TSS ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881334	chr4:171713039-171842726	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171790200-171793400	Weak transcription	HMEC	breast
2	chr4:171790200-171793600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:171792400-171793800	Weak transcription	NHEK	skin
4	chr4:171793000-171793600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:171793200-171793600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links