Variant report
| Variant | rs62344474 |
|---|---|
| Chromosome Location | chr4:171938398-171938399 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:21346332..21349152-chr4:171938151..171940290,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000150456 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs2048201 | 0.81[EUR][1000 genomes] |
| rs56886621 | 0.81[EUR][1000 genomes] |
| rs61012267 | 0.81[EUR][1000 genomes] |
| rs61448487 | 0.81[EUR][1000 genomes] |
| rs6419980 | 0.81[EUR][1000 genomes] |
| rs6818346 | 0.81[EUR][1000 genomes] |
| rs6827582 | 0.81[EUR][1000 genomes] |
| rs7340816 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv881345 | chr4:171673765-172228547 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018793 | chr4:171808272-172395180 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv880853 | chr4:171842726-171939724 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv881662 | chr4:171842726-171957000 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1023543 | chr4:171895573-171939724 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv3337374 | chr4:171937527-171939725 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 7 | esv3405208 | chr4:171937977-171939275 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:171929000-171944400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
