Variant report

Variant	rs62345887
Chromosome Location	chr5:14520430-14520431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10053327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62345860	0.84[EUR][1000 genomes]
rs62345871	0.84[EUR][1000 genomes]
rs62345872	0.84[EUR][1000 genomes]
rs62345873	0.84[EUR][1000 genomes]
rs62345874	0.84[EUR][1000 genomes]
rs62345875	0.84[EUR][1000 genomes]
rs62345879	0.84[EUR][1000 genomes]
rs62345881	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62345882	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62345883	0.84[EUR][1000 genomes]
rs62345884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62345885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62345886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6863759	0.84[EUR][1000 genomes]
rs6891562	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv830211	chr5:14474675-14675776	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14508800-14525600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:14509000-14522000	Weak transcription	Fetal Brain Female	brain
3	chr5:14509200-14523200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:14511400-14522200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:14519200-14526600	Weak transcription	Brain Germinal Matrix	brain
6	chr5:14520400-14521800	Enhancers	GM12878-XiMat	blood
7	chr5:14520400-14522200	Enhancers	Primary B cells from peripheral blood	blood
8	chr5:14520400-14522400	Enhancers	Primary B cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links