Variant report

Variant	rs62348114
Chromosome Location	chr5:15960050-15960051
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1393264	0.90[EUR][1000 genomes]
rs16867861	1.00[AMR][1000 genomes]
rs16867864	1.00[AMR][1000 genomes]
rs16867867	1.00[AMR][1000 genomes]
rs17525353	1.00[AMR][1000 genomes]
rs59174236	1.00[AMR][1000 genomes]
rs59606669	1.00[AMR][1000 genomes]
rs62348127	1.00[AMR][1000 genomes]
rs62348128	1.00[AMR][1000 genomes]
rs62348129	1.00[AMR][1000 genomes]
rs62348130	1.00[AMR][1000 genomes]
rs62348131	1.00[AMR][1000 genomes]
rs62348154	1.00[AMR][1000 genomes]
rs62348155	1.00[AMR][1000 genomes]
rs62348156	1.00[AMR][1000 genomes]
rs62348157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62348158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62348504	1.00[AMR][1000 genomes]
rs62348505	1.00[AMR][1000 genomes]
rs62348508	1.00[AMR][1000 genomes]
rs62349962	1.00[AMR][1000 genomes]
rs73040691	1.00[AMR][1000 genomes]
rs73040701	1.00[AMR][1000 genomes]
rs981590	0.95[EUR][1000 genomes]
rs981592	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv4735	chr5:15916346-15961432	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15958600-15960600	Enhancers	Fetal Lung	lung
2	chr5:15958800-15960200	Enhancers	Fetal Stomach	stomach
3	chr5:15959800-15960200	Enhancers	Fetal Heart	heart
4	chr5:15959800-15960600	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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