Variant report
| Variant | rs62350466 |
|---|---|
| Chromosome Location | chr5:17338032-17338033 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:17336392..17339049-chr5:17358419..17360973,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs62348035 | 1.00[AFR][1000 genomes] |
| rs62348037 | 1.00[AFR][1000 genomes] |
| rs62350463 | 1.00[AFR][1000 genomes] |
| rs62350465 | 1.00[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs62350521 | 1.00[AFR][1000 genomes] |
| rs72740536 | 1.00[AFR][1000 genomes] |
| rs72740540 | 1.00[AFR][1000 genomes] |
| rs72740542 | 1.00[AFR][1000 genomes] |
| rs72740543 | 1.00[AFR][1000 genomes] |
| rs72740547 | 1.00[AFR][1000 genomes] |
| rs72740548 | 1.00[AFR][1000 genomes] |
| rs72740551 | 1.00[AFR][1000 genomes] |
| rs72740553 | 1.00[AFR][1000 genomes] |
| rs72740555 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029959 | chr5:17133214-17455995 | Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv461988 | chr5:17296342-17484038 | Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| 3 | nsv597313 | chr5:17296342-17484038 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| 4 | nsv830219 | chr5:17325802-17518914 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 32 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:17336600-17339400 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
