The 2.0 version of rSNPBase

Variant report

Variant rs62358492
Chromosome Location chr5:58314818-58314819
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58279400-58317600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr5:58279600-58330400 Weak transcription Fetal Stomach stomach
3 chr5:58281800-58321600 Weak transcription Osteobl bone
4 chr5:58286200-58316200 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr5:58286200-58330400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr5:58286200-58330600 Weak transcription Thymus Thymus
7 chr5:58288800-58330600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
8 chr5:58296000-58321600 Weak transcription Aorta Aorta
9 chr5:58298600-58317800 Weak transcription Stomach Smooth Muscle stomach
10 chr5:58299600-58316600 Weak transcription Primary T killer memory cells from peripheral blood blood
11 chr5:58299800-58318000 Weak transcription Right Ventricle heart
12 chr5:58302000-58315200 Weak transcription Psoas Muscle Psoas
13 chr5:58302400-58316200 Weak transcription Placenta Amnion Placenta Amnion
14 chr5:58302400-58321600 Weak transcription Gastric stomach
15 chr5:58302800-58315200 Weak transcription Colon Smooth Muscle Colon
16 chr5:58303600-58317800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
17 chr5:58304000-58316800 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr5:58304000-58316800 Weak transcription Rectal Smooth Muscle rectum
19 chr5:58305800-58315400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
20 chr5:58307000-58322000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr5:58310800-58323400 Weak transcription Fetal Muscle Trunk muscle
22 chr5:58312000-58315000 Genic enhancers A549 lung
23 chr5:58312200-58315400 Strong transcription Primary T helper cells fromperipheralblood blood
24 chr5:58312400-58315600 Strong transcription Hela-S3 cervix
25 chr5:58312400-58316000 Strong transcription HSMM muscle
26 chr5:58312600-58315200 Genic enhancers Primary T helper 17 cells PMA-I stimulated --
27 chr5:58312600-58316600 Weak transcription Duodenum Mucosa Duodenum
28 chr5:58313000-58315400 Strong transcription Primary T killer naive cells fromperipheralblood blood
29 chr5:58313000-58317600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr5:58313000-58333400 Weak transcription Lung lung
31 chr5:58313200-58316600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr5:58313200-58316800 Weak transcription Pancreatic Islets Pancreatic Islet
33 chr5:58313200-58325600 Weak transcription Fetal Lung lung
34 chr5:58313200-58330200 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr5:58313400-58316400 Weak transcription Fetal Adrenal Gland Adrenal Gland
36 chr5:58313800-58317800 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr5:58314000-58315200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr5:58314000-58316600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr5:58314000-58316800 Weak transcription Primary hematopoietic stem cells short term culture blood
40 chr5:58314000-58318600 Strong transcription Fetal Thymus thymus
41 chr5:58314200-58315000 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr5:58314200-58316200 Weak transcription Primary T cells fromperipheralblood blood
43 chr5:58314200-58316600 Weak transcription Primary T helper naive cells fromperipheralblood blood
44 chr5:58314200-58318000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
45 chr5:58314200-58318400 Enhancers Fetal Heart heart
46 chr5:58314400-58315800 Genic enhancers Primary T helper cells PMA-I stimulated --
47 chr5:58314400-58323200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr5:58314600-58316600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr5:58314600-58321600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr5:58314800-58315000 Enhancers Fetal Muscle Leg muscle

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Last update: Aug 31, 2015