Variant report

Variant	rs62364135
Chromosome Location	chr5:111605313-111605314
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs13158768	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13160791	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13166322	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13171756	0.89[AMR][1000 genomes]
rs13180416	0.81[AMR][1000 genomes]
rs13183224	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13184442	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17134318	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17134331	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17134343	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17134350	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34069146	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34136685	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34489497	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34721765	0.85[AMR][1000 genomes]
rs34947473	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35005258	0.85[AMR][1000 genomes]
rs35182061	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35212577	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35368594	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35538937	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35625614	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35705963	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35808967	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35843631	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35938930	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4485968	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4957640	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4957643	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4958023	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4958026	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4958033	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56318754	0.81[AMR][1000 genomes]
rs62364081	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62364136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62364138	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62364140	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62364141	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62364144	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62364145	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62365192	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62365194	0.81[AMR][1000 genomes]
rs62365198	0.85[AMR][1000 genomes]
rs62370377	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6865000	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71579180	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73787790	0.84[AMR][1000 genomes]
rs7714295	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv948869	chr5:111476404-111695183	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv531291	chr5:111497440-111756788	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv599371	chr5:111519018-111676755	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111564600-111609600	Weak transcription	Pancreas	Pancrea
2	chr5:111568600-111609600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:111584800-111605600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr5:111585800-111606000	Weak transcription	Spleen	Spleen
5	chr5:111586600-111626400	Weak transcription	Gastric	stomach
6	chr5:111590400-111609600	Weak transcription	Psoas Muscle	Psoas
7	chr5:111590400-111628200	Weak transcription	Aorta	Aorta
8	chr5:111590600-111605800	Weak transcription	Right Ventricle	heart
9	chr5:111590800-111617000	Weak transcription	Left Ventricle	heart
10	chr5:111590800-111617200	Weak transcription	Esophagus	oesophagus
11	chr5:111590800-111618200	Weak transcription	Right Atrium	heart
12	chr5:111591400-111606600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:111593400-111605600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr5:111594000-111606200	Weak transcription	HUVEC	blood vessel
15	chr5:111594000-111611600	Weak transcription	Placenta	Placenta
16	chr5:111594800-111605800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr5:111594800-111615000	Weak transcription	Fetal Kidney	kidney
18	chr5:111596000-111605800	Weak transcription	Hela-S3	cervix
19	chr5:111598600-111606200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr5:111600800-111612800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:111601800-111612600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:111603400-111605600	Weak transcription	Fetal Heart	heart

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