Variant report

Variant	rs62365313
Chromosome Location	chr5:79765086-79765087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13187593	0.84[ASN][1000 genomes]
rs34748622	0.87[ASN][1000 genomes]
rs62365285	0.87[ASN][1000 genomes]
rs62367060	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72763551	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1028027	chr5:79694699-79841752	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79722600-79765400	Weak transcription	Fetal Brain Male	brain
2	chr5:79731400-79768000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr5:79732200-79766200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr5:79733400-79782600	Weak transcription	NHLF	lung
5	chr5:79744800-79783200	Weak transcription	Colonic Mucosa	Colon
6	chr5:79751800-79766400	Strong transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:79753400-79769600	Weak transcription	HUVEC	blood vessel
8	chr5:79754600-79769600	Weak transcription	Osteobl	bone
9	chr5:79755600-79768000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:79757000-79770000	Weak transcription	NHDF-Ad	bronchial
11	chr5:79757400-79769400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:79758400-79766400	Weak transcription	Colon Smooth Muscle	Colon
13	chr5:79758600-79766200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr5:79759200-79766000	Strong transcription	Stomach Smooth Muscle	stomach
15	chr5:79759400-79765200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr5:79759400-79765800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr5:79759400-79766000	Weak transcription	Fetal Thymus	thymus
18	chr5:79759400-79766000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr5:79759400-79766400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr5:79759400-79767800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr5:79759400-79768800	Weak transcription	NH-A	brain
22	chr5:79759400-79775000	Weak transcription	Hela-S3	cervix
23	chr5:79759400-79778800	Weak transcription	Small Intestine	intestine
24	chr5:79759400-79779200	Weak transcription	Lung	lung
25	chr5:79759400-79782800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:79759600-79766200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr5:79760200-79765400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr5:79760200-79766800	Strong transcription	Liver	Liver
29	chr5:79760400-79765200	Strong transcription	Primary B cells from cord blood	blood
30	chr5:79760400-79765200	Weak transcription	Pancreas	Pancrea
31	chr5:79760400-79766200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr5:79760800-79765200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr5:79760800-79765400	Weak transcription	Fetal Heart	heart
34	chr5:79761000-79765400	Strong transcription	Brain Inferior Temporal Lobe	brain
35	chr5:79761400-79765200	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr5:79761800-79766000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr5:79762400-79765200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr5:79762400-79765800	Strong transcription	HSMM	muscle
39	chr5:79762600-79769200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr5:79762800-79765600	Strong transcription	Brain Hippocampus Middle	brain
41	chr5:79762800-79765600	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr5:79762800-79766200	Weak transcription	A549	lung
43	chr5:79763000-79769800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:79763200-79765200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr5:79763200-79765200	Weak transcription	Fetal Brain Female	brain
46	chr5:79763200-79765800	Strong transcription	Duodenum Mucosa	Duodenum
47	chr5:79763200-79766200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr5:79763200-79766200	Weak transcription	Fetal Muscle Trunk	muscle
49	chr5:79763200-79767400	Weak transcription	Aorta	Aorta
50	chr5:79763200-79772400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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