Variant report

Variant	rs62365881
Chromosome Location	chr5:95003106-95003107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:94851973..94854960-chr5:95001161..95003587,2	K562	blood:
2	chr5:94977116..95012475-chr5:95055682..95079552,215	K562	blood:
3	chr5:95002978..95007140-chr5:95040184..95043277,3	MCF-7	breast:
4	chr5:94980512..95018354-chr5:95057997..95080764,228	K562	blood:
5	chr5:95002921..95004601-chr5:95084426..95086645,2	K562	blood:
6	chr5:95001196..95004141-chr5:95016294..95019056,2	MCF-7	breast:
7	chr5:95000816..95004243-chr5:95066766..95069424,4	MCF-7	breast:
8	chr5:94998665..95005080-chr5:95065235..95073616,11	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000164292	Chromatin interaction
ENSG00000198677	Chromatin interaction
ENSG00000145757	Chromatin interaction
ENSG00000250240	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11747129	0.93[AMR][1000 genomes]
rs28926213	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94983200-95005000	Weak transcription	Left Ventricle	heart
2	chr5:94983400-95005000	Weak transcription	Placenta	Placenta
3	chr5:94983600-95005000	Weak transcription	Adipose Nuclei	Adipose
4	chr5:94983800-95004800	Weak transcription	Psoas Muscle	Psoas
5	chr5:94984200-95007800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:94989000-95004800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:94991600-95005600	Weak transcription	Fetal Lung	lung
8	chr5:94992000-95004600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:95000400-95003200	Weak transcription	Fetal Stomach	stomach
10	chr5:95000400-95004000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr5:95000400-95004200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr5:95000400-95004200	Weak transcription	HSMM	muscle
13	chr5:95000400-95004600	Weak transcription	Colon Smooth Muscle	Colon
14	chr5:95000400-95004800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr5:95000400-95005000	Weak transcription	Brain Angular Gyrus	brain
16	chr5:95000400-95005200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr5:95000600-95003400	Weak transcription	NHLF	lung
18	chr5:95000600-95004000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:95000600-95004000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:95000600-95004200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:95000600-95004200	Weak transcription	NH-A	brain
22	chr5:95000600-95004200	Weak transcription	NHDF-Ad	bronchial
23	chr5:95000600-95004200	Weak transcription	Osteobl	bone
24	chr5:95000600-95004400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:95000600-95004400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:95000600-95004400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr5:95000600-95004600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr5:95000600-95004600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr5:95000600-95004800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr5:95000600-95004800	Weak transcription	Liver	Liver
31	chr5:95000600-95004800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr5:95000600-95004800	Weak transcription	Brain Hippocampus Middle	brain
33	chr5:95000600-95005000	Weak transcription	Ovary	ovary
34	chr5:95000600-95005200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr5:95000600-95005200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr5:95000600-95005200	Weak transcription	Fetal Heart	heart
37	chr5:95000800-95005000	Weak transcription	Brain Substantia Nigra	brain
38	chr5:95001000-95004400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr5:95001200-95004000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr5:95002400-95003400	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr5:95002400-95003600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr5:95002800-95003400	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr5:95003000-95003800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:95003000-95005800	Enhancers	K562	blood
45	chr5:95003000-95007600	Weak transcription	Monocytes-CD14+_RO01746	blood

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