Variant report

Variant	rs62366057
Chromosome Location	chr5:93440655-93440656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93438260..93443010-chr5:93443942..93448321,5	K562	blood:

Variant related genes	Relation type
ENSG00000113391	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17489155	1.00[AFR][1000 genomes]
rs62364565	1.00[AFR][1000 genomes]
rs62364567	1.00[AFR][1000 genomes]
rs62364569	1.00[AFR][1000 genomes]
rs62364574	1.00[AFR][1000 genomes]
rs62364576	1.00[AFR][1000 genomes]
rs62364577	1.00[AFR][1000 genomes]
rs62364580	1.00[AFR][1000 genomes]
rs62364581	1.00[AFR][1000 genomes]
rs62364582	1.00[AFR][1000 genomes]
rs62364583	1.00[AFR][1000 genomes]
rs62364584	1.00[AFR][1000 genomes]
rs62364585	1.00[AFR][1000 genomes]
rs62364586	1.00[AFR][1000 genomes]
rs62366021	1.00[AFR][1000 genomes]
rs62366050	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs62367162	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62367166	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv530552	chr5:93416111-93588509	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93416600-93445800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr5:93419200-93445200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr5:93423400-93442800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:93430000-93441000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr5:93431000-93440800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:93431000-93446600	Weak transcription	Gastric	stomach
7	chr5:93433800-93441000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr5:93433800-93445800	Weak transcription	Fetal Thymus	thymus
9	chr5:93433800-93446400	Weak transcription	Ovary	ovary
10	chr5:93434000-93440800	Weak transcription	Primary B cells from cord blood	blood
11	chr5:93435800-93444800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr5:93436000-93444800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr5:93439000-93440800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:93439600-93446000	Weak transcription	HSMMtube	muscle
15	chr5:93440000-93441400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr5:93440000-93446200	Weak transcription	NH-A	brain
17	chr5:93440200-93442800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:93440400-93440800	Weak transcription	Primary T cells from cord blood	blood
19	chr5:93440400-93446000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr5:93440600-93446000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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