Variant report

Variant	rs62366234
Chromosome Location	chr5:60578997-60578998
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10041973	0.86[ASN][1000 genomes]
rs10056472	0.81[ASN][1000 genomes]
rs10079115	0.81[ASN][1000 genomes]
rs10939894	0.83[ASN][1000 genomes]
rs10939895	0.86[ASN][1000 genomes]
rs11747588	0.81[ASN][1000 genomes]
rs11949390	0.83[ASN][1000 genomes]
rs12696981	0.81[ASN][1000 genomes]
rs12696982	0.86[ASN][1000 genomes]
rs13179814	0.86[ASN][1000 genomes]
rs13355792	0.81[ASN][1000 genomes]
rs4235485	0.81[ASN][1000 genomes]
rs4315878	0.86[ASN][1000 genomes]
rs4379148	0.81[ASN][1000 genomes]
rs4640746	0.83[ASN][1000 genomes]
rs62366231	0.86[ASN][1000 genomes]
rs6449523	0.86[ASN][1000 genomes]
rs67749311	0.81[ASN][1000 genomes]
rs72759299	0.86[ASN][1000 genomes]
rs7721603	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034038	chr5:60375328-60607654	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	esv3387374	chr5:60577245-60579868	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3323240	chr5:60577545-60579693	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60571800-60583800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60572000-60582400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:60573400-60586600	Weak transcription	Esophagus	oesophagus
4	chr5:60573400-60594800	Weak transcription	Right Atrium	heart
5	chr5:60574000-60585400	Weak transcription	Spleen	Spleen
6	chr5:60576600-60581200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:60576600-60588800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:60577000-60582400	Weak transcription	NHLF	lung
9	chr5:60577200-60579400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:60577200-60581800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:60577200-60582000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr5:60577200-60582400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr5:60577200-60582400	Weak transcription	Pancreas	Pancrea
14	chr5:60577200-60582400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr5:60577200-60582400	Weak transcription	HSMM	muscle
16	chr5:60577200-60582600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr5:60577200-60585400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:60577400-60580600	Weak transcription	Brain Germinal Matrix	brain
19	chr5:60577400-60581200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:60577400-60582000	Weak transcription	NHDF-Ad	bronchial
21	chr5:60577400-60584800	Weak transcription	A549	lung
22	chr5:60577600-60580800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr5:60577800-60581800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:60577800-60585200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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