Variant report

Variant	rs62366708
Chromosome Location	chr5:57528641-57528642
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62366745	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57521800-57535600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:57522600-57531000	Weak transcription	Osteobl	bone
3	chr5:57525200-57535400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr5:57526200-57529400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:57526200-57535600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:57526200-57535600	Weak transcription	Psoas Muscle	Psoas
7	chr5:57526200-57544000	Weak transcription	Aorta	Aorta
8	chr5:57526800-57530800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:57527200-57530800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:57527200-57531000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:57527200-57531000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:57527200-57531000	Weak transcription	NHEK	skin
13	chr5:57527200-57532600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:57527200-57535600	Weak transcription	HMEC	breast
15	chr5:57527400-57535800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:57528200-57530600	Weak transcription	Hela-S3	cervix
17	chr5:57528600-57529000	Weak transcription	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links