Variant report

Variant	rs62366821
Chromosome Location	chr5:44875449-44875450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027897	chr5:44695278-45061623	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv881564	chr5:44783255-44914579	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv880397	chr5:44800665-44939293	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv880483	chr5:44827292-45038026	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44872600-44875800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:44874800-44875800	Enhancers	Hela-S3	cervix
3	chr5:44874800-44876000	Enhancers	HMEC	breast
4	chr5:44875000-44875800	Enhancers	NHEK	skin
5	chr5:44875000-44876000	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr5:44875000-44876400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr5:44875000-44876400	Enhancers	HUVEC	blood vessel
8	chr5:44875000-44877000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:44875200-44876000	Active TSS	A549	lung
10	chr5:44875200-44876000	Enhancers	NH-A	brain
11	chr5:44875200-44876200	Flanking Active TSS	GM12878-XiMat	blood
12	chr5:44875200-44876600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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