Variant report

Variant	rs62367498
Chromosome Location	chr5:93110199-93110200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28857258	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9285013	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93077200-93130400	Weak transcription	Spleen	Spleen
2	chr5:93077400-93111000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:93087800-93124000	Weak transcription	Pancreas	Pancrea
4	chr5:93092400-93112000	Weak transcription	Psoas Muscle	Psoas
5	chr5:93094800-93111000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:93096400-93113600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr5:93100600-93136200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:93101200-93164200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr5:93101400-93112000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr5:93101800-93136600	Weak transcription	HSMMtube	muscle
11	chr5:93102600-93113200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:93103800-93113200	Weak transcription	Brain Germinal Matrix	brain
13	chr5:93106600-93114200	Weak transcription	Fetal Brain Female	brain
14	chr5:93106800-93113000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr5:93106800-93125400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr5:93106800-93132400	Weak transcription	Placenta	Placenta
17	chr5:93107000-93124800	Weak transcription	HSMM	muscle
18	chr5:93107200-93113400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr5:93107400-93120600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr5:93108000-93110800	Weak transcription	Fetal Kidney	kidney
21	chr5:93108000-93113400	Weak transcription	Brain Angular Gyrus	brain
22	chr5:93108200-93111000	Strong transcription	Left Ventricle	heart
23	chr5:93108200-93111400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
24	chr5:93108200-93111800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr5:93108200-93111800	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr5:93108200-93112000	Strong transcription	Primary B cells from cord blood	blood
27	chr5:93108200-93118200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr5:93108200-93118800	Weak transcription	Osteobl	bone
29	chr5:93108400-93111200	Strong transcription	Duodenum Mucosa	Duodenum
30	chr5:93108400-93111400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:93108400-93111400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr5:93108400-93111400	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr5:93108400-93111600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr5:93108400-93111600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr5:93108400-93111600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr5:93108400-93112000	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr5:93108400-93112000	Strong transcription	Ovary	ovary
38	chr5:93108600-93110200	Weak transcription	Fetal Brain Male	brain
39	chr5:93108600-93110400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr5:93108600-93111200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr5:93108600-93111600	Strong transcription	Colon Smooth Muscle	Colon
42	chr5:93108600-93112000	Strong transcription	Primary hematopoietic stem cells	blood
43	chr5:93108600-93112000	Strong transcription	Adipose Nuclei	Adipose
44	chr5:93108600-93113000	Weak transcription	Fetal Thymus	thymus
45	chr5:93108600-93124800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr5:93108600-93130600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr5:93108800-93111000	Weak transcription	Aorta	Aorta
48	chr5:93108800-93111000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr5:93108800-93111400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr5:93108800-93111800	Strong transcription	Primary T helper cells fromperipheralblood	blood

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