Variant report

Variant	rs62368283
Chromosome Location	chr5:50035096-50035097
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:50020188..50022113-chr5:50033665..50035934,2	MCF-7	breast:
2	chr5:50028364..50030290-chr5:50032967..50035142,2	MCF-7	breast:
3	chr5:49995029..49996581-chr5:50034174..50037169,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12656200	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12658769	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13158037	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13168120	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13170746	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16884728	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34776244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35940648	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56187641	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62365520	0.88[EUR][1000 genomes]
rs62366935	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62366936	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62368280	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71615982	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7700817	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7719213	0.80[ASN][1000 genomes]
rs7723602	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016583	chr5:49455624-50116720	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1023140	chr5:49455624-50121623	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv918220	chr5:49584188-50111282	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv931010	chr5:49584189-50118254	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv523212	chr5:49597497-50058043	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv2757995	chr5:49748352-50058182	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv2759342	chr5:49748352-50058182	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv462159	chr5:49960673-50229851	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv598108	chr5:49960673-50229851	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1030068	chr5:49986171-50047352	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv537760	chr5:49986171-50047352	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1016237	chr5:49986171-50118816	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv537761	chr5:49986171-50118816	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv1034445	chr5:49986171-50492609	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv521214	chr5:49988020-50037381	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv462160	chr5:49988020-50058043	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv598109	chr5:49988020-50058043	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv598110	chr5:49988020-50089919	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	nsv462162	chr5:49989701-50040778	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	nsv598111	chr5:49989701-50040778	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	nsv598112	chr5:49989701-50062611	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv462163	chr5:49989701-50088317	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
23	nsv598113	chr5:49989701-50088317	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
24	nsv598114	chr5:49991561-50088317	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
25	nsv462164	chr5:50017724-50063035	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	nsv598115	chr5:50017724-50063035	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:50014400-50036000	Weak transcription	Primary B cells from cord blood	blood
2	chr5:50023200-50036400	Weak transcription	Pancreas	Pancrea
3	chr5:50023200-50038400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:50023400-50038600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr5:50023400-50040200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr5:50024000-50038200	Weak transcription	Primary T cells from cord blood	blood
7	chr5:50024000-50038600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr5:50024000-50040000	Weak transcription	Small Intestine	intestine
9	chr5:50026600-50038800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:50027000-50040000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr5:50030400-50040000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr5:50031200-50040200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr5:50031800-50035600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:50031800-50038200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr5:50032600-50037800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr5:50032800-50038200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr5:50033000-50039800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:50033200-50038200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr5:50033200-50038800	Weak transcription	Thymus	Thymus
20	chr5:50033200-50040400	Weak transcription	Ovary	ovary
21	chr5:50034000-50037000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr5:50034000-50038200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr5:50034000-50038200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr5:50034200-50035200	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr5:50034200-50036000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr5:50034400-50035200	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr5:50034400-50035200	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr5:50034400-50040000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr5:50034600-50035200	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr5:50034600-50035200	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr5:50034600-50035200	Genic enhancers	Primary T cells fromperipheralblood	blood
32	chr5:50034600-50035400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr5:50034600-50038800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr5:50034800-50035200	Enhancers	H1 Cell Line	embryonic stem cell
35	chr5:50034800-50035200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr5:50034800-50035200	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr5:50034800-50035200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr5:50034800-50036200	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr5:50035000-50035600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr5:50035000-50038600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr5:50035000-50038800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr5:50035000-50040200	Weak transcription	Fetal Intestine Small	intestine
43	chr5:50035000-50040200	Weak transcription	Stomach Mucosa	stomach
44	chr5:50035000-50041200	Weak transcription	Gastric	stomach
45	chr5:50035000-50041400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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