Variant report

Variant	rs62373307
Chromosome Location	chr5:124609169-124609170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124608857..124611312-chr5:124615964..124618402,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11241799	0.87[ASN][1000 genomes]
rs11744285	1.00[ASN][1000 genomes]
rs13176117	0.87[ASN][1000 genomes]
rs13186616	0.87[ASN][1000 genomes]
rs17521352	1.00[ASN][1000 genomes]
rs17521472	1.00[ASN][1000 genomes]
rs34584680	0.87[ASN][1000 genomes]
rs35734424	1.00[ASN][1000 genomes]
rs59765583	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124593200-124609200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:124599800-124613400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:124604200-124612400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:124605800-124611800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:124606000-124609200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:124606000-124609200	Weak transcription	Stomach Mucosa	stomach
7	chr5:124608200-124609200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:124608200-124609400	Enhancers	Brain Germinal Matrix	brain
9	chr5:124608400-124612800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:124608600-124609200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:124608600-124609200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr5:124608600-124609200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:124608600-124609400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:124608600-124609600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr5:124608800-124609200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr5:124608800-124609600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:124608800-124612600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:124609000-124609200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr5:124609000-124609400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr5:124609000-124609400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:124609000-124609400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr5:124609000-124609400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr5:124609000-124609400	Enhancers	Lung	lung
24	chr5:124609000-124609600	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr5:124609000-124610200	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr5:124609000-124614800	Enhancers	HUVEC	blood vessel

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