Variant report

Variant	rs62374313
Chromosome Location	chr5:68978990-68978991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr5:68978863-68979070	K562	blood:	n/a	n/a

Variant related genes	Relation type
GUSBP3	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034024	chr5:68760271-69118123	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv1808992	chr5:68827700-69181892	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv32846	chr5:68829015-69705591	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv11562	chr5:68830039-69095305	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv1806970	chr5:68830621-69172564	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv598448	chr5:68835256-69269712	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	esv1804538	chr5:68843820-69174160	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv471498	chr5:68851245-69320933	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv881772	chr5:68857837-69061001	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	esv1804910	chr5:68867282-69118123	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	esv1813695	chr5:68867282-69118123	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	esv3584530	chr5:68867294-69118135	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	esv1794597	chr5:68914802-69250604	Weak transcription Enhancers Strong transcription	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
14	esv1791878	chr5:68914802-69310204	Weak transcription Strong transcription Enhancers	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
15	esv1810965	chr5:68919002-68995924	Weak transcription Enhancers Strong transcription	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv17525	chr5:68925014-69199523	Weak transcription Enhancers Strong transcription	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv821218	chr5:68925014-69199523	Weak transcription Enhancers Strong transcription	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv830333	chr5:68944038-69164275	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
19	esv3410433	chr5:68952996-69192544	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
20	esv3471612	chr5:68953096-69192044	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
21	esv3471613	chr5:68953096-69192044	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
22	esv3347245	chr5:68953146-69070544	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv598465	chr5:68953901-69122007	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv1809425	chr5:68955543-68997481	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
25	esv1795268	chr5:68955543-69681690	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
26	esv13923	chr5:68957466-69497579	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
27	esv1826478	chr5:68958370-69461956	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
28	esv1802173	chr5:68958423-69705657	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
29	nsv881774	chr5:68963262-69121888	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
30	nsv881775	chr5:68963262-69403982	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
31	esv1793205	chr5:68965975-69179784	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
32	esv3494946	chr5:68968696-68980994	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
33	esv3494947	chr5:68968696-68980994	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
34	nsv980658	chr5:68972854-69079636	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
35	esv3470941	chr5:68976396-68982194	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
36	esv3470942	chr5:68976396-68982194	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
37	nsv598466	chr5:68977250-69174834	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
38	nsv881776	chr5:68977250-69405087	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
39	nsv881777	chr5:68977250-69470589	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
40	esv3446238	chr5:68978146-68980844	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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