Variant report

Variant	rs62375895
Chromosome Location	chr5:127285917-127285918
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:127277558..127280504-chr5:127284897..127288204,4	MCF-7	breast:
2	chr5:127283928..127287234-chr5:127417993..127420755,3	MCF-7	breast:
3	chr5:127284310..127285987-chr5:127419203..127421181,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000064651	Chromatin interaction
ENSG00000245937	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62373664	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127267400-127292200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:127269800-127292400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:127271200-127294800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:127274400-127287000	Weak transcription	Primary T cells from cord blood	blood
5	chr5:127274800-127295000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:127274800-127296000	Weak transcription	Primary B cells from cord blood	blood
7	chr5:127278400-127286400	Weak transcription	Fetal Intestine Large	intestine
8	chr5:127278400-127286400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr5:127278400-127292800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr5:127278400-127292800	Weak transcription	Brain Substantia Nigra	brain
11	chr5:127278400-127292800	Weak transcription	HSMM	muscle
12	chr5:127278400-127294600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:127278400-127295600	Weak transcription	HSMMtube	muscle
14	chr5:127280200-127292800	Weak transcription	Gastric	stomach
15	chr5:127281600-127286400	Weak transcription	Fetal Intestine Small	intestine
16	chr5:127281800-127295400	Weak transcription	Psoas Muscle	Psoas
17	chr5:127285000-127286600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr5:127285200-127295200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr5:127285800-127286400	Enhancers	A549	lung
20	chr5:127285800-127303800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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