Variant report

Variant	rs62377153
Chromosome Location	chr5:96583541-96583542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10035513	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10035565	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10051764	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10054076	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10054816	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10055299	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10061167	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10063468	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10069958	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10075933	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10076852	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13354008	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13354043	0.84[EUR][1000 genomes]
rs13354523	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13356343	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13360631	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13361168	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17082247	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17087492	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17087493	0.87[EUR][1000 genomes]
rs17087516	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28385871	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28639483	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28750798	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28800648	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28837479	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60166438	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62377147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62377152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62377268	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377269	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377297	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377298	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377304	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377305	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377306	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377307	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377308	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377309	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377311	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377347	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377348	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377349	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377350	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377351	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377352	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377353	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377354	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377355	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377356	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377357	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62377359	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62378309	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62378342	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62378343	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62378462	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62378463	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6875798	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6882550	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6884708	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6886219	0.92[AMR][1000 genomes]
rs6888385	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7714487	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7721324	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7736813	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv830412	chr5:96427305-96606619	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1019790	chr5:96471680-96980633	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv537812	chr5:96471680-96980633	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv534326	chr5:96531217-97283481	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv882394	chr5:96538585-97108559	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv1032548	chr5:96565121-97046804	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv537813	chr5:96565121-97046804	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96576600-96585200	Weak transcription	Dnd41	blood
2	chr5:96580000-96589800	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:96583400-96583600	Weak transcription	Rectal Smooth Muscle	rectum

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