Variant report

Variant	rs62382193
Chromosome Location	chr5:154274357-154274358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154134592..154137330-chr5:154274091..154276299,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction

rs_ID	r²[population]
rs62382170	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62382173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62382242	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62382246	1.00[AFR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154262800-154300800	Strong transcription	Fetal Brain Female	brain
2	chr5:154264000-154276600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:154264000-154312800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:154264200-154275600	Strong transcription	Brain Anterior Caudate	brain
5	chr5:154265200-154276400	Strong transcription	Skeletal Muscle Female	skeletal muscle
6	chr5:154265200-154278000	Strong transcription	Fetal Muscle Trunk	muscle
7	chr5:154265200-154279800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:154266000-154275800	Strong transcription	Brain Cingulate Gyrus	brain
9	chr5:154266200-154276400	Strong transcription	Brain Hippocampus Middle	brain
10	chr5:154266200-154285000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:154266200-154287600	Strong transcription	HepG2	liver
12	chr5:154266200-154288800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr5:154266200-154312200	Strong transcription	Fetal Thymus	thymus
14	chr5:154266200-154316600	Weak transcription	Stomach Mucosa	stomach
15	chr5:154266400-154278200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:154266400-154278800	Strong transcription	H9 Cell Line	embryonic stem cell
17	chr5:154266400-154293600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:154266400-154311200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr5:154266400-154312800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr5:154266400-154315600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:154266600-154276200	Strong transcription	Brain Substantia Nigra	brain
22	chr5:154266600-154276800	Strong transcription	GM12878-XiMat	blood
23	chr5:154266600-154282800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr5:154266600-154283600	Strong transcription	K562	blood
25	chr5:154266600-154284200	Strong transcription	Brain Germinal Matrix	brain
26	chr5:154266600-154285000	Strong transcription	Thymus	Thymus
27	chr5:154266600-154292600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr5:154266600-154292800	Strong transcription	Left Ventricle	heart
29	chr5:154266600-154293000	Strong transcription	Dnd41	blood
30	chr5:154266600-154293200	Strong transcription	Placenta	Placenta
31	chr5:154266600-154294600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr5:154266600-154312800	Strong transcription	Fetal Intestine Large	intestine
33	chr5:154266600-154313200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr5:154266600-154313600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr5:154266800-154274400	Strong transcription	Fetal Lung	lung
36	chr5:154266800-154278800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr5:154266800-154285200	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr5:154266800-154293000	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr5:154266800-154293600	Strong transcription	Stomach Smooth Muscle	stomach
40	chr5:154267000-154293600	Strong transcription	Primary T cells from cord blood	blood
41	chr5:154267000-154294400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr5:154267000-154304400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:154267000-154312800	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr5:154267200-154287400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr5:154267200-154293000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr5:154267200-154311800	Strong transcription	Primary B cells from peripheral blood	blood
47	chr5:154267200-154312800	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr5:154267400-154276000	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr5:154267400-154299000	Strong transcription	Fetal Stomach	stomach
50	chr5:154267600-154278800	Strong transcription	Liver	Liver

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