Variant report

Variant	rs62383085
Chromosome Location	chr5:154428636-154428637
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17570361	0.83[ASN][1000 genomes]
rs3763026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62380560	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62383083	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62383084	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883058	chr5:154375465-154432580	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1023588	chr5:154415586-154464455	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154426000-154429800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:154426200-154428800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:154426600-154429200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:154426600-154429200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:154426600-154433000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:154427000-154428800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:154427800-154428800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:154428400-154430400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr5:154428400-154430600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:154428600-154429600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr5:154428600-154429800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:154428600-154430400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr5:154428600-154430600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:154428600-154432200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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