Variant report

Variant	rs62385142
Chromosome Location	chr6:5017399-5017400
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1108040	0.85[ASN][1000 genomes]
rs1108041	0.88[ASN][1000 genomes]
rs11967778	0.91[ASN][1000 genomes]
rs11967814	0.91[ASN][1000 genomes]
rs17139235	0.91[ASN][1000 genomes]
rs1749155	0.88[ASN][1000 genomes]
rs1771868	0.88[ASN][1000 genomes]
rs2147705	0.88[ASN][1000 genomes]
rs2764128	0.88[ASN][1000 genomes]
rs2764131	0.88[ASN][1000 genomes]
rs2764133	0.88[ASN][1000 genomes]
rs2764140	0.88[ASN][1000 genomes]
rs2764147	0.81[ASN][1000 genomes]
rs2764150	0.81[ASN][1000 genomes]
rs2764170	0.88[ASN][1000 genomes]
rs2764189	0.88[ASN][1000 genomes]
rs2985677	0.88[ASN][1000 genomes]
rs4281005	0.81[ASN][1000 genomes]
rs56960166	0.91[ASN][1000 genomes]
rs57793325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59552394	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59638108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62385113	1.00[AMR][1000 genomes]
rs62385115	1.00[AMR][1000 genomes]
rs62385117	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62385118	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62385119	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62385121	0.87[ASN][1000 genomes]
rs62385122	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62385123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62385148	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62385159	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62386470	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62386471	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73365175	0.87[EUR][1000 genomes]
rs877229	0.81[ASN][1000 genomes]
rs9328283	0.87[ASN][1000 genomes]
rs9378925	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv462622	chr6:4904380-5172009	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv600871	chr6:4904380-5172009	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1033905	chr6:4955826-5080904	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv600872	chr6:4975313-5342190	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
8	nsv1031837	chr6:4996667-5418726	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
9	nsv1017380	chr6:5007870-5152551	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5005200-5025800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:5013400-5025600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:5013600-5026200	Weak transcription	Ovary	ovary
4	chr6:5014800-5025800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:5015200-5020200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:5015200-5023800	Weak transcription	Primary T cells from cord blood	blood
7	chr6:5015200-5025800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:5015800-5025800	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:5016400-5020400	Enhancers	HepG2	liver
10	chr6:5017200-5017400	Enhancers	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links