Variant report

Variant	rs62391730
Chromosome Location	chr5:126110666-126110667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17532839	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17598428	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17598867	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3763156	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3805739	0.87[EUR][1000 genomes]
rs55656009	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62391696	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62391699	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62391701	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62391704	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62391731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62391735	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62391738	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62391742	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62392862	0.87[EUR][1000 genomes]
rs6874636	0.90[ASN][1000 genomes]
rs7714589	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7732759	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949054	chr5:125918148-126254480	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv534292	chr5:125993451-126259315	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126102400-126111200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:126105800-126111200	Weak transcription	GM12878-XiMat	blood
3	chr5:126109800-126111200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr5:126110600-126111400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:126110600-126111400	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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