Variant report

Variant	rs62393539
Chromosome Location	chr5:151854006-151854007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10434724	0.87[EUR][1000 genomes]
rs11954677	0.87[EUR][1000 genomes]
rs11956510	0.86[AFR][1000 genomes]
rs11959548	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12652853	0.85[EUR][1000 genomes]
rs12658265	0.87[EUR][1000 genomes]
rs12660058	0.87[EUR][1000 genomes]
rs1422337	0.87[EUR][1000 genomes]
rs1422366	0.87[EUR][1000 genomes]
rs1422367	0.87[EUR][1000 genomes]
rs17113231	0.87[EUR][1000 genomes]
rs17113236	0.87[EUR][1000 genomes]
rs17113252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17113267	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1820039	0.87[EUR][1000 genomes]
rs1862287	0.87[EUR][1000 genomes]
rs2080932	0.87[EUR][1000 genomes]
rs2080933	0.87[EUR][1000 genomes]
rs2194085	0.84[EUR][1000 genomes]
rs3749787	0.87[EUR][1000 genomes]
rs4389678	0.87[EUR][1000 genomes]
rs4602615	0.87[EUR][1000 genomes]
rs4602616	0.87[EUR][1000 genomes]
rs55638905	0.87[EUR][1000 genomes]
rs55657913	0.87[EUR][1000 genomes]
rs61640731	0.87[EUR][1000 genomes]
rs62393528	0.87[EUR][1000 genomes]
rs62393543	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62393545	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6861042	0.87[EUR][1000 genomes]
rs6879741	0.87[EUR][1000 genomes]
rs7341041	0.87[EUR][1000 genomes]
rs7700695	0.87[EUR][1000 genomes]
rs7716395	0.87[EUR][1000 genomes]
rs888883	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv432815	chr5:151682807-151875807	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv432816	chr5:151691807-151875807	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3326555	chr5:151853947-151854135	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151850000-151854400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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