Variant report

Variant	rs62393683
Chromosome Location	chr6:25633432-25633433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1003688	0.81[AMR][1000 genomes]
rs1321248	0.88[AMR][1000 genomes]
rs1321250	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2092161	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2281074	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2328891	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2876691	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56026359	0.81[AMR][1000 genomes]
rs56034365	0.81[AMR][1000 genomes]
rs932316	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467556	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883488	chr6:25592489-25731691	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25622800-25634800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:25629000-25638200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:25630200-25640800	Weak transcription	Pancreas	Pancrea
4	chr6:25632000-25634400	Weak transcription	HepG2	liver
5	chr6:25632000-25637200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:25632000-25638400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:25632200-25634400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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