Variant report

Variant	rs62394273
Chromosome Location	chr6:25833722-25833723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:25833459-25833723	HepG2	liver:	n/a	n/a
2	HNF4A	chr6:25833391-25833790	HepG2	liver:	n/a	chr6:25833637-25833652 chr6:25833639-25833651 chr6:25833638-25833650 chr6:25833636-25833651 chr6:25833637-25833652 chr6:25833637-25833652 chr6:25833637-25833652 chr6:25833635-25833653 chr6:25833729-25833737 chr6:25833638-25833651
3	NR2F2	chr6:25833407-25833847	HepG2	liver:	n/a	n/a
4	ZEB1	chr6:25833386-25833959	HepG2	liver:	n/a	n/a
5	EP300	chr6:25833218-25833868	HepG2	liver:	n/a	n/a
6	FOXA2	chr6:25833380-25833747	HepG2	liver:	n/a	n/a
7	MAFK	chr6:25833439-25833807	HepG2	liver:	n/a	chr6:25833624-25833639 chr6:25833624-25833640
8	MAFF	chr6:25833445-25833805	HepG2	liver:	n/a	chr6:25833623-25833641
9	HDAC2	chr6:25833407-25833798	HepG2	liver:	n/a	n/a
10	HEY1	chr6:25833362-25833822	HepG2	liver:	n/a	n/a
11	HNF4A	chr6:25833357-25833808	HepG2	liver:	n/a	chr6:25833637-25833652 chr6:25833639-25833651 chr6:25833638-25833650 chr6:25833636-25833651 chr6:25833637-25833652 chr6:25833637-25833652 chr6:25833637-25833652 chr6:25833635-25833653 chr6:25833729-25833737 chr6:25833638-25833651
12	HNF4G	chr6:25833438-25833799	HepG2	liver:	n/a	chr6:25833637-25833652 chr6:25833639-25833651 chr6:25833638-25833650 chr6:25833637-25833652 chr6:25833637-25833652 chr6:25833635-25833650 chr6:25833637-25833652 chr6:25833635-25833653 chr6:25833729-25833737 chr6:25833638-25833651
13	EP300	chr6:25833350-25833756	HepG2	liver:	n/a	n/a
14	FOXA1	chr6:25833233-25833870	HepG2	liver:	n/a	n/a
15	NFIC	chr6:25832998-25833896	HepG2	liver:	n/a	n/a
16	MYBL2	chr6:25833246-25833927	HepG2	liver:	n/a	n/a
17	FOXA1	chr6:25833395-25833763	HepG2	liver:	n/a	n/a
18	TEAD4	chr6:25833277-25833791	HepG2	liver:	n/a	n/a
19	SP1	chr6:25833284-25833799	HepG2	liver:	n/a	n/a
20	MAFK	chr6:25833452-25833816	HepG2	liver:	n/a	chr6:25833624-25833639 chr6:25833624-25833640
21	HNF4G	chr6:25833351-25833812	HepG2	liver:	n/a	chr6:25833637-25833652 chr6:25833639-25833651 chr6:25833638-25833650 chr6:25833637-25833652 chr6:25833637-25833652 chr6:25833635-25833650 chr6:25833637-25833652 chr6:25833635-25833653 chr6:25833729-25833737 chr6:25833638-25833651

Variant related genes	Relation type
SLC17A1	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1359231	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17271121	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799354	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3887266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45493498	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56027330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62392756	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62392759	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62394267	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs62394268	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62394270	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62394271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394289	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62394291	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394292	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394294	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62394295	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394296	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394297	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394299	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72843528	1.00[ASN][1000 genomes]
rs72843538	0.91[AFR][1000 genomes]
rs72843569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72843579	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv427747	chr6:25641380-25908218	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25831800-25833800	Enhancers	Fetal Intestine Large	intestine
2	chr6:25832400-25834200	Enhancers	Liver	Liver
3	chr6:25833000-25834000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:25833200-25835200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:25833200-25835800	Enhancers	HepG2	liver

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