Variant report

Variant	rs62394917
Chromosome Location	chr6:11481903-11481904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11751931	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16871371	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17607537	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17607558	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17675742	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17675772	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2140109	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2177158	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2177159	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34066851	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34255222	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34336996	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34342746	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34363244	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34486680	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34586980	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34630993	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34678413	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34793558	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34951511	0.82[EUR][1000 genomes]
rs35074878	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35087778	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35100959	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35160576	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35250180	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35491413	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35658210	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35877256	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35938392	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36021289	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36023953	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36053861	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36120363	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3942485	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4711303	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4713556	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4713562	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4713569	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62394918	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62394920	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62394921	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62394922	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62394923	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62394924	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62394925	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62394927	0.84[EUR][1000 genomes]
rs62394928	0.84[EUR][1000 genomes]
rs6457608	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66502560	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67452935	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67807015	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6904209	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6907890	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6907900	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6907944	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6922323	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6923613	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6923798	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71533604	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71533605	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7752671	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9366802	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9394108	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv18391	chr6:11477421-11483532	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62394917	TMEM170B	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11480200-11491200	Weak transcription	Fetal Kidney	kidney
2	chr6:11481000-11483600	Weak transcription	Pancreas	Pancrea
3	chr6:11481000-11486600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:11481200-11485800	Weak transcription	Ovary	ovary

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