Variant report

Variant rs62395042
Chromosome Location chr5:178753982-178753983
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:178742000-178758000 Weak transcription Colon Smooth Muscle Colon
2 chr5:178746400-178758600 Weak transcription Gastric stomach
3 chr5:178747800-178758600 Weak transcription HSMM muscle
4 chr5:178748000-178758000 Weak transcription HSMMtube muscle
5 chr5:178748200-178766600 Weak transcription Muscle Satellite Cultured Cells --
6 chr5:178751800-178754800 Bivalent Enhancer Fetal Muscle Trunk muscle
7 chr5:178752200-178754200 Enhancers NHDF-Ad bronchial
8 chr5:178752400-178754400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
9 chr5:178752400-178754600 Enhancers Adipose Nuclei Adipose
10 chr5:178752400-178754800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr5:178752600-178754200 Enhancers Placenta Amnion Placenta Amnion
12 chr5:178752600-178754200 Bivalent Enhancer Skeletal Muscle Male skeletal muscle
13 chr5:178752600-178764400 Weak transcription Esophagus oesophagus
14 chr5:178752800-178754000 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr5:178752800-178754200 Bivalent Enhancer Stomach Smooth Muscle stomach
16 chr5:178753000-178754600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
17 chr5:178753000-178754800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr5:178753000-178757200 Weak transcription Spleen Spleen
19 chr5:178753200-178754600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
20 chr5:178753200-178754800 Enhancers Osteobl bone
21 chr5:178753600-178754000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
22 chr5:178753600-178754000 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
23 chr5:178753600-178754000 Flanking Active TSS ES-UCSF4 Cell Line embryonic stem cell
24 chr5:178753600-178754000 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
25 chr5:178753600-178754000 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
26 chr5:178753600-178754200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr5:178753600-178754200 Flanking Bivalent TSS/Enh iPS-20b Cell Line embryonic stem cell
28 chr5:178753600-178754400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr5:178753600-178754800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr5:178753800-178754000 Flanking Bivalent TSS/Enh ES-I3 Cell Line embryonic stem cell
31 chr5:178753800-178754000 Flanking Bivalent TSS/Enh H1 Cell Line embryonic stem cell
32 chr5:178753800-178754000 Flanking Bivalent TSS/Enh H9 Cell Line embryonic stem cell
33 chr5:178753800-178754000 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
34 chr5:178753800-178754000 Flanking Bivalent TSS/Enh HUES6 Cell Line embryonic stem cell
35 chr5:178753800-178754000 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
36 chr5:178753800-178754000 Flanking Bivalent TSS/Enh iPS-15b Cell Line embryonic stem cell
37 chr5:178753800-178754000 Flanking Bivalent TSS/Enh iPS DF 6.9 Cell Line embryonic stem cell
38 chr5:178753800-178754000 Flanking Bivalent TSS/Enh iPS DF 19.11 Cell Line embryonic stem cell
39 chr5:178753800-178754000 Enhancers Brain Germinal Matrix brain
40 chr5:178753800-178754200 Bivalent Enhancer Fetal Adrenal Gland Adrenal Gland
41 chr5:178753800-178754400 Enhancers NHLF lung
42 chr5:178753800-178754600 Enhancers Fetal Stomach stomach
43 chr5:178753800-178754800 Bivalent Enhancer Fetal Muscle Leg muscle
44 chr5:178753800-178754800 Enhancers Fetal Thymus thymus
45 chr5:178753800-178754800 Enhancers Ovary ovary
46 chr5:178753800-178761600 Weak transcription Fetal Lung lung

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