Variant report

Variant	rs62395814
Chromosome Location	chr6:31640999-31641000
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:31640888..31643598-chr6:31665920..31668358,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LY6G5B-1	chr6:31640938-31641553	NONHSAT108816

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1062309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200969	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2257331	0.83[ASN][1000 genomes]
rs2844451	0.83[ASN][1000 genomes]
rs34431565	0.85[AMR][1000 genomes]
rs544167	0.83[ASN][1000 genomes]
rs62395789	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395791	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395823	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395833	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62395847	1.00[ASN][1000 genomes]
rs62395848	1.00[ASN][1000 genomes]
rs62395849	1.00[ASN][1000 genomes]
rs62395855	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
2	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
3	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
4	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
5	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
6	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
7	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
8	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
9	nsv432868	chr6:31338844-31721033	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	250 gene(s)	inside rSNPs	diseases
10	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
11	nsv830627	chr6:31496214-31659950	Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
12	nsv884418	chr6:31525448-31741078	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
13	nsv1033154	chr6:31550614-32009410	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
14	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
15	esv3428142	chr6:31615800-31881809	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	257 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31634800-31641400	Strong transcription	H1 Cell Line	embryonic stem cell
2	chr6:31634800-31641400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:31634800-31641400	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:31634800-31641400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:31634800-31648200	Weak transcription	Right Atrium	heart
6	chr6:31635000-31641400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:31635000-31641400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:31635000-31641400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:31635000-31641400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:31635000-31641400	Strong transcription	Brain Cingulate Gyrus	brain
11	chr6:31635000-31641800	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:31635000-31641800	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr6:31635000-31642000	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:31635000-31642000	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:31635000-31642000	Strong transcription	Brain Inferior Temporal Lobe	brain
16	chr6:31635000-31642000	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:31635000-31642000	Strong transcription	Spleen	Spleen
18	chr6:31635000-31642200	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr6:31635000-31642800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:31635000-31642800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:31635000-31643800	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr6:31635200-31641200	Strong transcription	Esophagus	oesophagus
23	chr6:31635200-31641200	Strong transcription	Fetal Lung	lung
24	chr6:31635200-31641400	Strong transcription	H9 Cell Line	embryonic stem cell
25	chr6:31635200-31641400	Strong transcription	Colonic Mucosa	Colon
26	chr6:31635200-31641600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:31635200-31641800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:31635200-31641800	Strong transcription	HSMMtube	muscle
29	chr6:31635200-31642000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:31635200-31642200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:31635200-31643600	Strong transcription	Fetal Muscle Trunk	muscle
32	chr6:31635400-31641200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:31635400-31641400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:31635400-31641400	Strong transcription	Brain Angular Gyrus	brain
35	chr6:31635400-31641400	Strong transcription	Ovary	ovary
36	chr6:31635400-31641400	Strong transcription	Right Ventricle	heart
37	chr6:31635400-31641600	Strong transcription	Fetal Brain Female	brain
38	chr6:31635400-31642000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:31635400-31642000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:31635400-31642000	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr6:31635400-31642000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:31635400-31642000	Strong transcription	Fetal Intestine Large	intestine
43	chr6:31635400-31642000	Strong transcription	HSMM	muscle
44	chr6:31635400-31643000	Strong transcription	Fetal Muscle Leg	muscle
45	chr6:31635400-31643000	Strong transcription	Lung	lung
46	chr6:31635400-31643600	Strong transcription	Primary T cells from cord blood	blood
47	chr6:31635400-31643600	Strong transcription	Brain Anterior Caudate	brain
48	chr6:31635600-31641200	Strong transcription	Primary B cells from peripheral blood	blood
49	chr6:31635600-31641600	Strong transcription	Placenta Amnion	Placenta Amnion
50	chr6:31635600-31641800	Strong transcription	NH-A	brain

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