Variant report

Variant	rs62396404
Chromosome Location	chr6:38807630-38807631
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38806340..38808361-chr6:38813238..38814885,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11751371	1.00[ASN][1000 genomes]
rs11756771	1.00[ASN][1000 genomes]
rs12192604	1.00[ASN][1000 genomes]
rs12192779	1.00[ASN][1000 genomes]
rs12192848	1.00[ASN][1000 genomes]
rs12193813	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12194119	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197353	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197467	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206059	1.00[ASN][1000 genomes]
rs12209734	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215108	1.00[ASN][1000 genomes]
rs17552381	1.00[ASN][1000 genomes]
rs17552881	1.00[ASN][1000 genomes]
rs17623162	1.00[ASN][1000 genomes]
rs2092550	1.00[ASN][1000 genomes]
rs4279429	1.00[ASN][1000 genomes]
rs45578845	1.00[ASN][1000 genomes]
rs55902132	1.00[ASN][1000 genomes]
rs55933840	1.00[ASN][1000 genomes]
rs56093987	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56148146	1.00[ASN][1000 genomes]
rs56246807	1.00[ASN][1000 genomes]
rs56266437	1.00[ASN][1000 genomes]
rs56284095	1.00[ASN][1000 genomes]
rs56323406	1.00[ASN][1000 genomes]
rs62396392	1.00[ASN][1000 genomes]
rs62396394	1.00[ASN][1000 genomes]
rs62396399	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62396403	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62396406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62396408	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933930	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72856585	1.00[ASN][1000 genomes]
rs72856596	1.00[ASN][1000 genomes]
rs72856597	1.00[ASN][1000 genomes]
rs72856598	1.00[ASN][1000 genomes]
rs72858234	1.00[ASN][1000 genomes]
rs72858240	1.00[ASN][1000 genomes]
rs72858280	1.00[ASN][1000 genomes]
rs72858282	1.00[ASN][1000 genomes]
rs72858286	1.00[ASN][1000 genomes]
rs72858288	1.00[ASN][1000 genomes]
rs72858292	1.00[ASN][1000 genomes]
rs72858299	1.00[ASN][1000 genomes]
rs7760621	0.81[AMR][1000 genomes]
rs7773144	1.00[ASN][1000 genomes]
rs991766	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38766800-38824400	Weak transcription	K562	blood
2	chr6:38796400-38811600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:38804600-38811600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:38804600-38821000	Weak transcription	H9 Cell Line	embryonic stem cell

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