Variant report

Variant	rs62396630
Chromosome Location	chr5:151660617-151660618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11950114	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11950281	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17112995	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17446807	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4958527	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55664233	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55696736	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56237127	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62394469	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62394473	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62394474	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62394476	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62394478	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62394495	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62394501	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62394506	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7447179	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151657600-151664000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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