Variant report

Variant	rs62397028
Chromosome Location	chr6:38308448-38308449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38302380..38305369-chr6:38307558..38309248,2	K562	blood:
2	chr6:38307277..38309097-chr6:38311796..38314497,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11757371	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv602957	chr6:38305770-38395874	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38278000-38310600	Weak transcription	Gastric	stomach
2	chr6:38285000-38327800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:38291400-38317600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:38299200-38313400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:38299800-38317800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:38301600-38313400	Weak transcription	Psoas Muscle	Psoas
7	chr6:38301600-38315800	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:38301600-38324600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:38301800-38310400	Weak transcription	Primary B cells from cord blood	blood
10	chr6:38301800-38313400	Weak transcription	Aorta	Aorta
11	chr6:38302000-38310400	Weak transcription	Primary T cells from cord blood	blood
12	chr6:38302000-38315800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr6:38302000-38318200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:38302200-38315800	Weak transcription	Brain Substantia Nigra	brain
15	chr6:38303800-38311000	Weak transcription	Left Ventricle	heart
16	chr6:38304000-38310400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr6:38304600-38323000	Weak transcription	Ovary	ovary
18	chr6:38305000-38309400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:38305000-38309600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:38305000-38317600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:38305000-38318000	Weak transcription	Colon Smooth Muscle	Colon
22	chr6:38305800-38308600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:38305800-38310800	Weak transcription	Pancreas	Pancrea
24	chr6:38305800-38315200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:38306000-38313400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:38306000-38315800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr6:38306200-38314200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:38306200-38314400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:38306400-38313000	Weak transcription	NHDF-Ad	bronchial
30	chr6:38306400-38313600	Weak transcription	HSMMtube	muscle
31	chr6:38306400-38314200	Weak transcription	HSMM	muscle
32	chr6:38306800-38309200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:38306800-38313400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:38306800-38314400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:38307000-38309000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:38307200-38314800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr6:38307600-38318400	Weak transcription	Fetal Intestine Small	intestine
38	chr6:38307800-38315800	Weak transcription	Brain Anterior Caudate	brain
39	chr6:38308000-38314600	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links