Variant report

Variant rs62397953
Chromosome Location chr6:20206343-20206344
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:20193000-20209200 Weak transcription Breast Myoepithelial Primary Cells Breast
2 chr6:20198600-20206400 Enhancers Colon Smooth Muscle Colon
3 chr6:20199400-20207600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr6:20199400-20210000 Weak transcription H9 Cell Line embryonic stem cell
5 chr6:20199600-20207600 Enhancers Rectal Mucosa Donor 31 rectum
6 chr6:20200600-20209200 Enhancers Fetal Adrenal Gland Adrenal Gland
7 chr6:20201200-20206800 Enhancers Primary hematopoietic stem cells blood
8 chr6:20201200-20207000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
9 chr6:20201400-20210800 Weak transcription Fetal Stomach stomach
10 chr6:20201600-20206800 Enhancers Primary T regulatory cells fromperipheralblood blood
11 chr6:20201600-20207800 Enhancers Primary hematopoietic stem cells short term culture blood
12 chr6:20201800-20209000 Weak transcription Fetal Lung lung
13 chr6:20202000-20206800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
14 chr6:20202400-20206800 Enhancers Primary T helper cells PMA-I stimulated --
15 chr6:20202600-20206600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
16 chr6:20202600-20207000 Enhancers Duodenum Smooth Muscle Duodenum
17 chr6:20202600-20211200 Enhancers Stomach Mucosa stomach
18 chr6:20203200-20206600 Enhancers Primary T cells fromperipheralblood blood
19 chr6:20203200-20210400 Weak transcription Fetal Kidney kidney
20 chr6:20203200-20211200 Weak transcription Liver Liver
21 chr6:20203200-20211200 Weak transcription NHDF-Ad bronchial
22 chr6:20203600-20208000 Enhancers Rectal Smooth Muscle rectum
23 chr6:20203600-20210400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr6:20203800-20206600 Enhancers Primary T killer memory cells from peripheral blood blood
25 chr6:20203800-20208200 Enhancers Ovary ovary
26 chr6:20204000-20206400 Enhancers Sigmoid Colon Sigmoid Colon
27 chr6:20204000-20207800 Enhancers Fetal Thymus thymus
28 chr6:20204000-20208200 Enhancers ES-I3 Cell Line embryonic stem cell
29 chr6:20204200-20206400 Enhancers Right Ventricle heart
30 chr6:20204200-20207000 Enhancers Adipose Nuclei Adipose
31 chr6:20204200-20207200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
32 chr6:20204200-20207800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
33 chr6:20204400-20206400 Enhancers Fetal Muscle Leg muscle
34 chr6:20204400-20206400 Enhancers Gastric stomach
35 chr6:20204400-20206400 Enhancers Pancreas Pancrea
36 chr6:20204400-20206800 Enhancers Primary Natural Killer cells fromperipheralblood blood
37 chr6:20204400-20207000 Enhancers Esophagus oesophagus
38 chr6:20204400-20207200 Enhancers Lung lung
39 chr6:20204400-20210000 Weak transcription HUES64 Cell Line embryonic stem cell
40 chr6:20204400-20210400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr6:20204600-20208800 Weak transcription Stomach Smooth Muscle stomach
42 chr6:20204600-20211000 Weak transcription HMEC breast
43 chr6:20204600-20211200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
44 chr6:20204600-20211200 Weak transcription A549 lung
45 chr6:20204800-20207400 Weak transcription iPS-15b Cell Line embryonic stem cell
46 chr6:20204800-20210000 Weak transcription HUES48 Cell Line embryonic stem cell
47 chr6:20204800-20211200 Enhancers Fetal Heart heart
48 chr6:20205000-20207400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
49 chr6:20205000-20207800 Flanking Active TSS Primary neutrophils fromperipheralblood blood
50 chr6:20205000-20207800 Genic enhancers Fetal Intestine Small intestine

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