Variant report

Variant	rs62399340
Chromosome Location	chr6:33943630-33943631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33934133..33938274-chr6:33943444..33948778,6	MCF-7	breast:
2	chr6:33935012..33937286-chr6:33941317..33943972,2	K562	blood:
3	chr6:33942809..33944696-chr6:33949318..33951158,2	MCF-7	breast:
4	chr6:33936123..33939292-chr6:33941917..33944139,3	MCF-7	breast:
5	chr6:33935012..33937459-chr6:33942472..33944353,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7755524	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv5252	chr6:33919447-33955380	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv527079	chr6:33927311-33944014	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv437504	chr6:33928390-33944014	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv437505	chr6:33928390-33944014	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv437506	chr6:33932442-33944014	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv437507	chr6:33932442-33944014	Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
11	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
12	esv3485515	chr6:33936724-33944072	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3485519	chr6:33937024-33944322	Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv437508	chr6:33937188-33944014	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3472457	chr6:33937374-33943872	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv2486134	chr6:33937431-33943700	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3485522	chr6:33937498-33943694	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv602851	chr6:33940897-33944014	Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv602854	chr6:33941227-33944014	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv885777	chr6:33942228-33997375	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
21	nsv885778	chr6:33942228-34007054	Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33942800-33944000	Active TSS	Rectal Mucosa Donor 31	rectum
2	chr6:33943200-33943800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:33943200-33944200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:33943200-33944400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr6:33943400-33943800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:33943400-33944000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
7	chr6:33943400-33944000	Active TSS	H9 Cell Line	embryonic stem cell
8	chr6:33943400-33944000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:33943400-33944000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr6:33943400-33944200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:33943400-33944200	Bivalent Enhancer	Fetal Brain Male	brain
12	chr6:33943400-33944200	Bivalent/Poised TSS	Fetal Brain Female	brain
13	chr6:33943400-33944400	Bivalent Enhancer	Fetal Thymus	thymus
14	chr6:33943600-33943800	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr6:33943600-33943800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:33943600-33943800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:33943600-33943800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
18	chr6:33943600-33943800	Flanking Bivalent TSS/Enh	Thymus	Thymus
19	chr6:33943600-33944000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:33943600-33944000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr6:33943600-33944000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:33943600-33944000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
23	chr6:33943600-33944000	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr6:33943600-33944000	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
25	chr6:33943600-33944000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr6:33943600-33944000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr6:33943600-33944200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
28	chr6:33943600-33944200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:33943600-33944200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
30	chr6:33943600-33944200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
31	chr6:33943600-33944200	Bivalent Enhancer	Fetal Stomach	stomach

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