Variant report

Variant	rs62399674
Chromosome Location	chr5:128305883-128305884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11241987	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11740215	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11743171	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs17616974	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs17616991	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs17678874	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2526248	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2526249	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2526251	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2526253	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2577426	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2577428	0.80[ASN][1000 genomes]
rs2577429	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2577430	0.80[ASN][1000 genomes]
rs2577432	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2577433	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2577435	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2577436	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2577437	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2577438	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2577439	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2577440	0.86[ASN][1000 genomes]
rs2577442	0.86[ASN][1000 genomes]
rs2577443	0.80[ASN][1000 genomes]
rs2577542	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2577543	0.80[ASN][1000 genomes]
rs2577544	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2577545	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2577546	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2577547	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs3094874	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs3098299	0.80[ASN][1000 genomes]
rs3098300	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs35386300	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs35779465	0.80[ASN][1000 genomes]
rs35869181	0.80[ASN][1000 genomes]
rs36157890	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs36171961	0.80[ASN][1000 genomes]
rs36188905	0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs36191603	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs36192465	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs62399671	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs62399673	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62399676	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs62399681	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs62399683	0.80[ASN][1000 genomes]
rs62399685	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs67198161	0.80[ASN][1000 genomes]
rs6861986	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6881009	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6881032	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830485	chr5:128298622-128480492	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	nsv882841	chr5:128301971-128400356	Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882842	chr5:128301971-128552706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128303000-128308800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:128303000-128309000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:128303200-128312600	Weak transcription	Fetal Heart	heart
4	chr5:128303400-128319400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:128304200-128311000	Weak transcription	Fetal Stomach	stomach

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