Variant report

Variant	rs62400316
Chromosome Location	chr6:45280142-45280143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7762045	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45275200-45290200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:45275600-45283000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:45276600-45280600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr6:45276800-45290400	Weak transcription	Fetal Heart	heart
5	chr6:45278400-45280600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr6:45278600-45281200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr6:45278600-45281200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:45278600-45288000	Weak transcription	Left Ventricle	heart
9	chr6:45278800-45281000	Enhancers	Dnd41	blood
10	chr6:45278800-45285000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:45279000-45280600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:45279000-45288400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:45279200-45280600	Weak transcription	Primary T cells from cord blood	blood
14	chr6:45279400-45280400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:45280000-45280200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr6:45280000-45290600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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