Variant report

Variant	rs62401130
Chromosome Location	chr6:44154531-44154532
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44152056..44154771-chr6:44158466..44160359,2	K562	blood:
2	chr6:44152776..44155726-chr6:44156919..44159966,5	K562	blood:
3	chr6:44153829..44155944-chr6:44169533..44171240,2	K562	blood:
4	chr6:44152329..44155208-chr6:44155507..44158419,2	K562	blood:
5	chr6:44139575..44142093-chr6:44153792..44155730,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13207350	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44151800-44154600	Enhancers	Stomach Mucosa	stomach
2	chr6:44153000-44160200	Weak transcription	Fetal Intestine Small	intestine
3	chr6:44153200-44154600	Enhancers	Fetal Thymus	thymus
4	chr6:44153200-44155200	Enhancers	HUVEC	blood vessel
5	chr6:44153600-44154600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:44153600-44154600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:44153600-44154600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:44153600-44154600	Enhancers	K562	blood
9	chr6:44153800-44154600	Enhancers	Fetal Muscle Trunk	muscle
10	chr6:44153800-44154600	Enhancers	Fetal Muscle Leg	muscle
11	chr6:44153800-44155200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:44153800-44155200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:44154000-44154600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:44154000-44163800	Weak transcription	Thymus	Thymus
15	chr6:44154200-44155000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:44154200-44160000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:44154200-44160200	Weak transcription	Lung	lung
18	chr6:44154400-44154800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:44154400-44154800	Weak transcription	Adipose Nuclei	Adipose
20	chr6:44154400-44157200	Weak transcription	GM12878-XiMat	blood
21	chr6:44154400-44158400	Enhancers	HepG2	liver
22	chr6:44154400-44159800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:44154400-44160000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:44154400-44160000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:44154400-44160000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:44154400-44160000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:44154400-44160000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:44154400-44160200	Weak transcription	Left Ventricle	heart
29	chr6:44154400-44160200	Weak transcription	Right Atrium	heart
30	chr6:44154400-44160200	Weak transcription	Spleen	Spleen
31	chr6:44154400-44160400	Weak transcription	Fetal Heart	heart
32	chr6:44154400-44168400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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