Variant report

Variant	rs62402041
Chromosome Location	chr6:24918348-24918349
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24910942..24913335-chr6:24918029..24919566,2	K562	blood:

Variant related genes	Relation type
ENSG00000111913	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2817730	0.94[ASN][1000 genomes]
rs2817734	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24912400-24919200	Weak transcription	Left Ventricle	heart
2	chr6:24912400-24919600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:24912400-24926600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:24912600-24918800	Weak transcription	GM12878-XiMat	blood
5	chr6:24912600-24919400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:24913000-24918600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:24913000-24919000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:24913000-24919000	Weak transcription	Spleen	Spleen
9	chr6:24913200-24918800	Genic enhancers	Primary B cells from cord blood	blood
10	chr6:24913400-24919000	Genic enhancers	Primary T cells fromperipheralblood	blood
11	chr6:24913400-24922200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
12	chr6:24913600-24918800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr6:24913600-24927400	Genic enhancers	Primary B cells from peripheral blood	blood
14	chr6:24914000-24918400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:24914200-24919200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:24914600-24920000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr6:24915000-24918600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:24915800-24919200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:24916000-24919000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr6:24916000-24919400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:24916000-24922000	Genic enhancers	Primary monocytes fromperipheralblood	blood
22	chr6:24916200-24919000	Genic enhancers	Primary T cells from cord blood	blood
23	chr6:24916200-24919000	Weak transcription	Right Atrium	heart
24	chr6:24916600-24918600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:24916600-24918800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:24916600-24918800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
27	chr6:24916800-24918800	Weak transcription	Fetal Heart	heart
28	chr6:24917000-24919200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr6:24917200-24918400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:24917200-24918600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr6:24917600-24918800	Enhancers	Fetal Thymus	thymus
32	chr6:24917600-24919000	Genic enhancers	Monocytes-CD14+_RO01746	blood
33	chr6:24917600-24919200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
34	chr6:24917600-24921400	Enhancers	Brain Germinal Matrix	brain
35	chr6:24917600-24922000	Enhancers	Fetal Muscle Leg	muscle
36	chr6:24917800-24918400	Enhancers	Fetal Muscle Trunk	muscle
37	chr6:24917800-24918800	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr6:24917800-24921200	Enhancers	Psoas Muscle	Psoas
39	chr6:24918000-24918400	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
40	chr6:24918000-24918800	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr6:24918000-24918800	Enhancers	Dnd41	blood
42	chr6:24918000-24918800	Enhancers	HSMMtube	muscle
43	chr6:24918200-24918400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr6:24918200-24919000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:24918200-24919000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:24918200-24919000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:24918200-24919200	Enhancers	Thymus	Thymus
48	chr6:24918200-24920200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:24918200-24920600	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr6:24918200-24920600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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