Variant report

Variant	rs62402707
Chromosome Location	chr6:34994143-34994144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34986567..34989328-chr6:34993280..34995092,2	K562	blood:
2	chr6:34984374..34990603-chr6:34991816..34996687,6	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62402704	1.00[EUR][1000 genomes]
rs62402705	1.00[EUR][1000 genomes]
rs62402706	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:34963600-35006600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:34979800-35002000	Weak transcription	GM12878-XiMat	blood
4	chr6:34986200-34996400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:34986200-35015000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:34986400-35011800	Weak transcription	Dnd41	blood
7	chr6:34986800-35014800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:34987000-35009000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:34987000-35015800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:34987400-34998600	Weak transcription	Primary B cells from cord blood	blood
11	chr6:34987400-34999200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:34987400-34999600	Weak transcription	Fetal Kidney	kidney
13	chr6:34987400-35015800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:34988200-34994200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:34988400-34995000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr6:34988400-34995600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr6:34988600-34999200	Enhancers	Brain Anterior Caudate	brain
18	chr6:34988800-34994400	Enhancers	Brain Substantia Nigra	brain
19	chr6:34989000-35002800	Weak transcription	Fetal Thymus	thymus
20	chr6:34989200-34996000	Weak transcription	Pancreas	Pancrea
21	chr6:34989400-34996800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:34989400-35002200	Weak transcription	Thymus	Thymus
23	chr6:34990000-34995200	Enhancers	Colon Smooth Muscle	Colon
24	chr6:34990000-34998400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:34990200-34995600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr6:34990600-34994200	Enhancers	Stomach Mucosa	stomach
27	chr6:34990600-34994400	Enhancers	Fetal Heart	heart
28	chr6:34990800-34994800	Weak transcription	Primary T cells from cord blood	blood
29	chr6:34990800-34995000	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr6:34990800-34996800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:34990800-34997600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:34990800-35002800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:34991000-34995000	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr6:34991200-34995400	Weak transcription	Gastric	stomach
35	chr6:34991200-34995800	Enhancers	Adipose Nuclei	Adipose
36	chr6:34991400-34994800	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr6:34991400-34995000	Enhancers	Left Ventricle	heart
38	chr6:34991800-34994200	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr6:34991800-34994200	Enhancers	HSMM	muscle
40	chr6:34991800-34994200	Enhancers	NHLF	lung
41	chr6:34991800-34994400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:34991800-34994400	Enhancers	Placenta Amnion	Placenta Amnion
43	chr6:34991800-34994400	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr6:34991800-34994800	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr6:34991800-34995000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:34991800-34995000	Enhancers	NHDF-Ad	bronchial
47	chr6:34991800-34995200	Enhancers	HMEC	breast
48	chr6:34991800-34996000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:34992000-34994200	Enhancers	A549	lung
50	chr6:34992000-34995000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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