Variant report

Variant	rs62404838
Chromosome Location	chr6:34746920-34746921
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34725370..34727177-chr6:34745635..34747402,2	K562	blood:

Variant related genes	Relation type
ENSG00000124562	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62398731	1.00[ASN][1000 genomes]
rs62398733	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv885795	chr6:34704613-34823187	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1025374	chr6:34723723-34887316	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv462905	chr6:34728253-34886436	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv602906	chr6:34728253-34886436	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1028363	chr6:34733071-34859045	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv885796	chr6:34739726-34823187	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
17	nsv1015792	chr6:34741917-34887316	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34726000-34747800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:34726000-34750000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:34726800-34747800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:34728600-34748400	Weak transcription	Fetal Heart	heart
5	chr6:34737400-34758800	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:34739000-34747600	Weak transcription	Gastric	stomach
7	chr6:34739200-34747400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:34739800-34747000	Weak transcription	A549	lung
9	chr6:34741200-34749000	Strong transcription	Fetal Intestine Small	intestine
10	chr6:34741200-34749000	Strong transcription	Fetal Stomach	stomach
11	chr6:34741200-34758600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:34741400-34759000	Weak transcription	Ovary	ovary
13	chr6:34741600-34747200	Weak transcription	NHDF-Ad	bronchial
14	chr6:34741600-34758800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:34741800-34747000	Weak transcription	GM12878-XiMat	blood
16	chr6:34742000-34758600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:34742000-34759000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:34742000-34759000	Weak transcription	Fetal Lung	lung
19	chr6:34742600-34750400	Weak transcription	Hela-S3	cervix
20	chr6:34742800-34750400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:34742800-34759000	Weak transcription	Left Ventricle	heart
22	chr6:34743200-34749200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:34743200-34749800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr6:34743200-34751200	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:34743200-34751800	Weak transcription	Brain Germinal Matrix	brain
26	chr6:34743200-34754000	Weak transcription	HSMMtube	muscle
27	chr6:34743200-34758000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:34743200-34758600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr6:34743200-34758800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:34743200-34758800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:34743400-34748800	Weak transcription	Thymus	Thymus
32	chr6:34743400-34749600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:34743400-34759000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:34743400-34759000	Weak transcription	Aorta	Aorta
35	chr6:34743600-34755400	Weak transcription	HepG2	liver
36	chr6:34743600-34758600	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr6:34743600-34758600	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr6:34743800-34747000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:34743800-34747000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:34743800-34747200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:34743800-34747400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr6:34743800-34747600	Weak transcription	Liver	Liver
43	chr6:34743800-34747800	Weak transcription	NH-A	brain
44	chr6:34743800-34748000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:34743800-34749200	Weak transcription	Fetal Brain Female	brain
46	chr6:34743800-34751400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr6:34743800-34758400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr6:34743800-34758400	Weak transcription	K562	blood
49	chr6:34743800-34758600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr6:34743800-34758800	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links