Variant report

Variant	rs62406605
Chromosome Location	chr6:36702774-36702775
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr6:36702643-36703091	GM12878	blood:	n/a	chr6:36702832-36702850
2	POLR2A	chr6:36701895-36703832	HL-60	blood:	n/a	n/a
3	MAZ	chr6:36702661-36703935	IMR90	lung:	n/a	n/a
4	CTCF	chr6:36702660-36702810	GM12872	blood:	n/a	n/a
5	POLR2A	chr6:36702134-36704101	NB4	blood:	n/a	n/a
6	POLR2A	chr6:36701915-36703986	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:36692869..36694899-chr6:36700775..36703080,2	MCF-7	breast:
2	chr6:36583432..36585248-chr6:36700120..36704013,3	MCF-7	breast:
3	chr6:36561849..36563615-chr6:36700031..36702846,2	K562	blood:

Variant related genes	Relation type
ENSG00000220349	TF binding region
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv885809	chr6:36687518-36719079	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv885810	chr6:36695223-36714491	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv885811	chr6:36695223-36719079	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
10	nsv885812	chr6:36696904-36705684	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv819609	chr6:36700559-36708943	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
12	nsv520755	chr6:36702284-36713720	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36694000-36703000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:36695800-36702800	Weak transcription	Gastric	stomach
3	chr6:36699200-36703200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:36699200-36703400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:36702000-36702800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr6:36702000-36704000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:36702200-36702800	Enhancers	Primary B cells from cord blood	blood
8	chr6:36702200-36702800	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:36702200-36702800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr6:36702200-36702800	Enhancers	Stomach Smooth Muscle	stomach
11	chr6:36702200-36703800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:36702200-36703800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:36702200-36703800	Enhancers	Spleen	Spleen
14	chr6:36702200-36704000	Enhancers	Esophagus	oesophagus
15	chr6:36702200-36704000	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr6:36702200-36704200	Enhancers	Stomach Mucosa	stomach
17	chr6:36702200-36704800	Enhancers	Lung	lung
18	chr6:36702400-36702800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:36702400-36702800	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr6:36702400-36702800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:36702400-36702800	Enhancers	Brain Angular Gyrus	brain
22	chr6:36702400-36702800	Enhancers	Brain Anterior Caudate	brain
23	chr6:36702400-36702800	Bivalent Enhancer	Brain Hippocampus Middle	brain
24	chr6:36702400-36702800	Enhancers	Duodenum Mucosa	Duodenum
25	chr6:36702400-36702800	Bivalent Enhancer	Fetal Muscle Leg	muscle
26	chr6:36702400-36702800	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr6:36702400-36702800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
28	chr6:36702400-36702800	Enhancers	NHDF-Ad	bronchial
29	chr6:36702400-36703000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:36702400-36703000	Enhancers	Fetal Brain Male	brain
31	chr6:36702400-36703000	Enhancers	Left Ventricle	heart
32	chr6:36702400-36703000	Enhancers	Ovary	ovary
33	chr6:36702400-36703400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr6:36702400-36703400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
35	chr6:36702400-36703400	Bivalent Enhancer	Placenta	Placenta
36	chr6:36702400-36703400	Enhancers	Fetal Thymus	thymus
37	chr6:36702400-36703400	Enhancers	GM12878-XiMat	blood
38	chr6:36702400-36703600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:36702400-36703600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:36702400-36703600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:36702400-36703600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr6:36702400-36703600	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr6:36702400-36703600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr6:36702400-36703800	Enhancers	Placenta Amnion	Placenta Amnion
45	chr6:36702400-36704000	Enhancers	Psoas Muscle	Psoas
46	chr6:36702400-36704000	Enhancers	Right Atrium	heart
47	chr6:36702400-36704000	Enhancers	Right Ventricle	heart
48	chr6:36702400-36704200	Enhancers	Small Intestine	intestine
49	chr6:36702600-36702800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:36702600-36702800	Enhancers	Brain Inferior Temporal Lobe	brain

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