Variant report

Variant	rs62406767
Chromosome Location	chr6:37502110-37502111
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37479736..37482449-chr6:37501228..37503661,2	K562	blood:
2	chr6:37493732..37497248-chr6:37498273..37502656,5	K562	blood:
3	chr6:37479736..37486031-chr6:37501228..37507298,5	K562	blood:
4	chr6:37490506..37492969-chr6:37501083..37503155,2	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FTSJD2-1	chr6:37502052-37502121	XLOC_005278
2	lnc-FTSJD2-1	chr6:37502052-37502122	XLOC_005278
3	lnc-FTSJD2-1	chr6:37502052-37502146	XLOC_005278
4	lnc-FTSJD2-1	chr6:37502052-37502121	ENSG00000204110.5
5	lnc-FTSJD2-1	chr6:37502052-37502121	ENSG00000204110.5

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12201357	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2776882	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2797779	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2797780	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2797782	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7774013	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37491000-37503000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:37493800-37514000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:37495200-37503000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr6:37495600-37502200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:37496800-37503200	Weak transcription	GM12878-XiMat	blood
6	chr6:37499600-37502800	Enhancers	Fetal Brain Male	brain
7	chr6:37500000-37502800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:37500800-37503400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:37501400-37503600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:37501600-37503400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:37501800-37502800	Enhancers	Fetal Brain Female	brain
12	chr6:37502000-37502800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:37502000-37503400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:37502000-37503400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr6:37502000-37504400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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