Variant report

Variant	rs62406784
Chromosome Location	chr6:69832027-69832028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1336633	0.81[EUR][1000 genomes]
rs1482328	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1482329	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1482331	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1567659	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1567660	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1586042	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1586043	0.81[EUR][1000 genomes]
rs1592054	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1592056	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1600873	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1825195	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2128291	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3778238	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4457127	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4706126	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4706866	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6918978	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6920644	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6929969	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7747753	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7760630	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9294820	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9294821	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9294822	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9342741	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9342742	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9346262	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9346266	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9351745	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9354817	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9354818	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9354820	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9360374	0.89[AFR][1000 genomes]
rs9360376	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9360377	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9360379	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9446099	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754259	chr6:69825681-69858930	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69821400-69832200	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:69831400-69832200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69831600-69832200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr6:69831600-69832200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:69831800-69838000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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