Variant report

Variant	rs62407528
Chromosome Location	chr6:30313440-30313441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30293960..30295031-chr6:30312956..30313507,3	Hela-S3	cervix:
2	chr6:30225542..30228363-chr6:30311426..30313496,2	MCF-7	breast:
3	chr6:30178310..30184484-chr6:30311860..30320436,13	MCF-7	breast:
4	chr6:30273472..30275726-chr6:30312691..30314327,2	MCF-7	breast:
5	chr20:47538415..47539934-chr6:30312760..30314556,2	MCF-7	breast:
6	chr6:30261501..30265546-chr6:30310228..30314438,4	K562	blood:
7	chr20:55838873..55840993-chr6:30313290..30315542,2	MCF-7	breast:
8	chr6:30170658..30173210-chr6:30313081..30315587,2	K562	blood:
9	chr11:71823213..71823772-chr6:30312858..30313568,2	Hela-S3	cervix:
10	chr6:30226682..30228906-chr6:30311932..30314057,2	MCF-7	breast:
11	chr16:31191531..31192208-chr6:30312969..30313543,2	Hela-S3	cervix:
12	chr6:30028283..30029937-chr6:30312414..30314218,2	K562	blood:
13	chr6:30311779..30313708-chr6:30523664..30525763,2	MCF-7	breast:
14	chr3:182971557..182972401-chr6:30312861..30313450,2	Hela-S3	cervix:
15	chr6:27114921..27115555-chr6:30312632..30313449,2	Hela-S3	cervix:
16	chr6:30312350..30314370-chr6:30326387..30329065,2	MCF-7	breast:
17	chr6:30293058..30297784-chr6:30308514..30315279,24	MCF-7	breast:
18	chr6:30312149..30313971-chr6:30583567..30587070,3	K562	blood:
19	chr6:30312087..30314441-chr6:30330908..30332882,2	MCF-7	breast:
20	chr6:30028283..30030226-chr6:30312404..30313914,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000234127	Chromatin interaction
ENSG00000231074	Chromatin interaction
ENSG00000204568	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000066379	Chromatin interaction
ENSG00000124198	Chromatin interaction
ENSG00000204576	Chromatin interaction
ENSG00000248167	Chromatin interaction
ENSG00000270604	Chromatin interaction
ENSG00000222894	Chromatin interaction
ENSG00000176597	Chromatin interaction
ENSG00000243753	Chromatin interaction
ENSG00000204599	Chromatin interaction
ENSG00000236405	Chromatin interaction
ENSG00000204623	Chromatin interaction
ENSG00000224486	Chromatin interaction
ENSG00000204590	Chromatin interaction
ENSG00000204569	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000110200	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17194467	1.00[AFR][1000 genomes]
rs34823152	1.00[AFR][1000 genomes]
rs56406541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62407529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7453937	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30312400-30313600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:30312400-30313600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:30312400-30313600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:30312400-30313600	Active TSS	Fetal Kidney	kidney
5	chr6:30312400-30313600	Active TSS	Rectal Smooth Muscle	rectum
6	chr6:30312400-30313600	Active TSS	A549	lung
7	chr6:30312400-30313800	Active TSS	Colonic Mucosa	Colon
8	chr6:30312400-30314000	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr6:30312400-30314000	Enhancers	Fetal Heart	heart
10	chr6:30312600-30313600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:30312600-30313600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:30312600-30313600	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr6:30312600-30313600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:30312600-30313600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:30312600-30313600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:30312600-30313600	Active TSS	Primary hematopoietic stem cells	blood
17	chr6:30312600-30313600	Active TSS	Primary hematopoietic stem cells short term culture	blood
18	chr6:30312600-30313600	Active TSS	Brain Cingulate Gyrus	brain
19	chr6:30312600-30313600	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr6:30312600-30313600	Active TSS	Fetal Brain Female	brain
21	chr6:30312600-30313600	Active TSS	Fetal Intestine Small	intestine
22	chr6:30312600-30313600	Active TSS	Fetal Lung	lung
23	chr6:30312600-30313600	Active TSS	Left Ventricle	heart
24	chr6:30312600-30313600	Active TSS	Ovary	ovary
25	chr6:30312600-30313600	Active TSS	Stomach Mucosa	stomach
26	chr6:30312600-30313800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:30312600-30313800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:30312600-30313800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:30312600-30313800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:30312600-30313800	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr6:30312600-30313800	Active TSS	Fetal Muscle Trunk	muscle
32	chr6:30312600-30313800	Active TSS	Fetal Stomach	stomach
33	chr6:30312600-30313800	Active TSS	Psoas Muscle	Psoas
34	chr6:30312600-30313800	Active TSS	Right Ventricle	heart
35	chr6:30312600-30314000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr6:30312600-30314000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:30312600-30314000	Active TSS	Fetal Intestine Large	intestine
38	chr6:30312600-30314200	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr6:30312800-30313600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:30312800-30313600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:30312800-30313600	Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr6:30312800-30313600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:30312800-30313600	Active TSS	Primary T cells from cord blood	blood
44	chr6:30312800-30313600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:30312800-30313600	Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr6:30312800-30313600	Active TSS	Primary T helper cells PMA-I stimulated	--
47	chr6:30312800-30313600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:30312800-30313600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:30312800-30313600	Active TSS	Muscle Satellite Cultured Cells	--
50	chr6:30312800-30313600	Active TSS	Cortex derived primary cultured neurospheres	brain

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