Variant report

Variant	rs62407562
Chromosome Location	chr6:33530346-33530347
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33528055..33530508-chr6:33533848..33535441,2	K562	blood:

Extended variants
information (count: 86 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs11751684	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11752179	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11755542	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11757035	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11757738	0.86[EUR][1000 genomes]
rs13198446	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17627049	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2284828	0.82[AMR][1000 genomes]
rs34222093	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34308820	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35150558	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35347341	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35381461	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3846853	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3846854	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3912039	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3912040	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3912041	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3916674	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4376348	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5000098	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55753118	0.81[ASN][1000 genomes]
rs55782090	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55963187	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56002904	0.81[EUR][1000 genomes]
rs56043172	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56069946	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56100919	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56199698	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56205713	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56206922	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56332659	0.86[EUR][1000 genomes]
rs62405891	0.80[EUR][1000 genomes]
rs62405895	0.82[EUR][1000 genomes]
rs62405898	0.83[EUR][1000 genomes]
rs62405899	0.81[EUR][1000 genomes]
rs62405926	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62405941	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62405942	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62405943	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62405948	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62405949	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62405953	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62405955	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62407561	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62407564	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62407565	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62407566	0.90[EUR][1000 genomes]
rs62407567	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62407569	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7751338	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7755821	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7761268	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7761464	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7765263	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7765393	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7775770	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7775914	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7776058	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7776246	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9296094	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9461875	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9461876	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9461877	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9461879	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9461880	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9461881	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9461882	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9461885	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9461887	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9469486	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469487	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469488	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469491	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469492	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469493	0.80[EUR][1000 genomes]
rs9469495	0.83[EUR][1000 genomes]
rs9469498	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469499	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9469500	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9469501	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469503	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9469504	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9469505	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9469506	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9469513	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62407562	BAK1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33516800-33537600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:33521200-33533800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:33529400-33530400	Enhancers	GM12878-XiMat	blood
4	chr6:33530000-33530400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:33530000-33530400	Enhancers	HMEC	breast
6	chr6:33530000-33530400	Enhancers	K562	blood

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