Variant report

Variant	rs62409683
Chromosome Location	chr4:44919225-44919226
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10013435	0.94[EUR][1000 genomes]
rs10032741	0.94[EUR][1000 genomes]
rs10033345	0.94[EUR][1000 genomes]
rs10212655	0.94[EUR][1000 genomes]
rs10212928	0.94[EUR][1000 genomes]
rs10938375	0.94[EUR][1000 genomes]
rs1116272	0.94[EUR][1000 genomes]
rs12374403	0.94[EUR][1000 genomes]
rs12650727	0.89[EUR][1000 genomes]
rs13144957	0.94[EUR][1000 genomes]
rs1390919	0.94[EUR][1000 genomes]
rs1390925	0.94[EUR][1000 genomes]
rs1390928	0.94[EUR][1000 genomes]
rs1472395	0.94[EUR][1000 genomes]
rs1496982	0.94[EUR][1000 genomes]
rs1496984	0.94[EUR][1000 genomes]
rs1496995	0.94[EUR][1000 genomes]
rs1497001	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1497012	0.92[EUR][1000 genomes]
rs1826866	0.94[EUR][1000 genomes]
rs1845945	0.94[EUR][1000 genomes]
rs1845946	0.94[EUR][1000 genomes]
rs1845950	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1845951	0.94[EUR][1000 genomes]
rs1845953	0.94[EUR][1000 genomes]
rs1908806	0.94[EUR][1000 genomes]
rs2348810	0.94[EUR][1000 genomes]
rs4074005	0.94[EUR][1000 genomes]
rs4074006	0.94[EUR][1000 genomes]
rs4235135	0.89[EUR][1000 genomes]
rs4498167	0.94[EUR][1000 genomes]
rs4695068	0.89[EUR][1000 genomes]
rs62409740	0.89[EUR][1000 genomes]
rs62409741	0.89[EUR][1000 genomes]
rs62409743	0.89[EUR][1000 genomes]
rs62411583	0.81[EUR][1000 genomes]
rs73141582	0.89[EUR][1000 genomes]
rs7653979	0.89[EUR][1000 genomes]
rs7661005	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7670039	0.89[EUR][1000 genomes]
rs7678611	0.94[EUR][1000 genomes]
rs7690764	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9291252	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9291253	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9291257	0.94[EUR][1000 genomes]
rs978555	0.94[EUR][1000 genomes]
rs9995550	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9998147	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1013488	chr4:44543808-44976123	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv915992	chr4:44705614-44972966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:44918400-44919400	Active TSS	Stomach Smooth Muscle	stomach
2	chr4:44919000-44919400	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr4:44919200-44928400	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links